RNA id: TU370902


Basic Information

Item Value
RNA id TU370902
length 3640
RNA type TUCP
GC content 0.43
exon number 2
gene id G313112
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2181979 ~ 2185677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATCATATAAAATGGTAGTAGCATTacataaatagtaataaatttttgtttatagaCATTAGCTCAAGAGGTTGcacaaacgaaaaaaaaaacgtcgTCGAACTATACTTTTGTGGCAACAAATACTGGATACCTTTTTCATAATTCAGTAGCACGGAGAGGTGACAAACACTTTTcccttaaattaaaaatgaaagaagagaaaataaaaataaaaaaaacagaactcaAACAGTAGATGAACTAGTGAACAATCTCTACCagcgattattattattatttttttccttctaaacTCTAGGGACAGATCAGAACACTGGTACAGTCAACACATATAGACACTTAAAGAGTtatgggaaagagagagagagagagagaggaaataaaaaataaactcaaaGCCACAGgaattctgtttttttgcaATGCCGCTGGATCAGCTAGACGAGCTACTAAAGATGCTTGGATGTGTGGAGTTTGTATAAGCAAGCAGCTACGATCGTCCTGCATTTgtcaagagggaaaaaaggcaAATTCAATCCCTAAACCTGCAAAACATCTGCTTGCTCTTCCACTGATCACGGCTTGATCTGGTCCGGCTTGAAGGAGAAAGACTGTGGAAGGTAGTTATGGAACGGAACTGGAAAAAGagtgtttaaaacaaaactgaCTGAAACTGAAGTCTCCTCATATATAGCCAGAGCGGCGTCTTTCAAAAGTCTCGAGACAACATCATATCAAAACAGAGCTTTTGTCTAATTCCCTCCATAATAATACAGCCAGTGGGTTTGGactaggcatgtgctgataatcaattataaaatatatcaggATTTTCTGCAAAATAACATTGCTACATTCGCTTTTACAGCGTGAGGCAGCGTatgctttctttatttaacGGAGCATCGCATAATTCTCTTCCATGAAAGTTTGAAAAACATGGTGGACAAAATTGTCGCTCCGTCTGAGGAATAATTCTTTAGCACTGTACTGTTTTAATACAATATGCTTAAGCAAACATTGGGTTATGACGATTTAAGATCGGCACAGGCCTAGTTTATGCAGCTCGTGGCATCCTTCTGCAATCAGACTTCCTAAATCACTTTGAGAAGATAAGGcttcaaagtaaaaaaagacATACGCAAGTCACTCGAAAGGCAAAAGTCCCAAAACTGTCCGTTCCCGAAGAgggttaaagaaaaaaaaaaatcaggaagtgGTTCTGCATAGTCAGTTCAACGGCtgttcttccttttctttcttcttcccttcagtttttttacacaccatgcttctcttgcaaaaaaaaaaaaaaaaagtgtacaaaagaccaaaaaataacaagaaataaggaggaaaaaaggaacTGTTCACAGGAGCAcctgagaaatgttttttttttttttaaaaaaagtctttctgCCGTCACATTCCCAGCCCGCGACAAATTCAAGTATCcgaaaagaaaacaacaaaaaaagaaaccatacagttatcataaataattataactttACAATTTTTTGAATTGACActttcatatttacaatatcTTAAATGCTTATgctactattttttttgtttcgtttCTTTAAGTGATTCCCTGAGAACTGAGTTGAGCATCTTGTCCTTTCTCTCCAGGTTTCCTTCCGTTCGTAGCCGCCGAGTGCATTCTAAGTGTTGGGAGCCGAGCGGGCACTTGTAGGGGGATGGCTGGGGGTGGCATGTGgaagatatttttgtttttttgtttttctggtcCTCTTGCATTTTTTCAATCTCTACATATAACCAAATTTTGATTAATGCTTGGAAAATATAATTGTTAATGCAGACAAGGTGAAAGGGGAGGGAGTGAATCAAGTGCTTGTATAACAACACAACTACAGTTACTACTATTTttgtttctgattattttctttctctaagAACAACATGTCTGATAGAGTCATGTGCCAATAATTACTGCCAAACGTTACTACTTTCAAGAGGTTGCCTAAGTAGGCAGCAAATTTGGCGAAGCATTGCATGCATGATAATGCTAAGCTTTAATGGTGAATCTCTGTCTGCATAACTCTCCCCCCCTAAAAGTAAAGCCATCTTTAGAAAGATGAGGTTTTTGTTCAGATTCAGGCGGAGAAGGAAACCCCGTGCTCTTCTCAGGTATGGAGGCGTGGCTCTCAGTAACGTTCCCTTAATTCTCTTTCTTCCCAACGCGAGAAAAAGGGCAAAGACAAACCAAGAGGAGCAGACAGAGGGGAGGGTGGCGTTCACGGCTTGGCTGATTCCTGGGTTATGTAGAATTGCGTTAAGATGAGGAACACCTCGATATTTCAGCTAGCTTTTTCGCTCTACCCCCGGGAACAAGGCCTCAGCCTCATCCTGTTAAAGCTGTTCCTTAAAATACAATCGAGGTATGACTGTAACACTGTGTgcgagtgtttttttttttcggaatGACTGTTTTGAGCTTATGAGCTCTTTGccgaaaaaaaaataagaaccACCAATCACCACGATGGAAAAGGCTCAAAATACTCCGCCTATCATTTGGTTTCTCTTTATGTGCCACTTCTGCATCTGTATTAAACTAAAGCAAGCATAAGCCGAAATCAAAAGGTTGTTCTGGCCTCCACAGGTTCTAATAAATCCGTGAACGTTGGTTGTTCACTAAACGCAAACTGtatcaaactaaaaaaaataaaaataaaggataCTCGGAATATACAGGAAGAAAATAATGCCTTAAATAAACGAGGAGTGAGTGGGGAGTCCTTTATATTCTCCTCAGCCAAATCGCTCACGCACGAGCATCATGAGCTTCTTCTTGCCCTTGTAGATCTGCTTGAGGTTGTCAATAAACTGGGCGAACTGCACGTGGCCGTCGTGTGCCATCAGGAAGGTGTCACGCGCTTTGCCCAGGAATTCAATGAACTCGCCGTAGTGGCGTGGGCTGATGTGCGTGAGGCGCGAGTGTGTGGTGCTGATGTAGGCGCCGATGGCGGCGTCCAGCAGTTGGCGCAGTGGCGCCTTGTCCGTGCTCATCAGCTTGCCTGAGCTGCGGCGGCCGGGGATACCAGCCAGGCCGGGCGCAGTCACCGTGCAGCGGCGCAGGATGTCCGAGAGCACGGTGGCACAGCGCACACCCTTTACCACCAACGGCACCATGGCGCCCAGCTCGTTCTTGCCCAGCGAGTGGCTGAGAGCGCATGCCCACAGGACATCGTTGATAGCCGGATGCGTGTCCTGGTTGTACGCCAAGCTCACATGTGCCATGGCCAACGATGCCAACTTGAAGGCACGCAGTGGGTAGCCGCGGTGTTCCATGTATCGCGCGATGGTGAACAATTGCGCATGCGTCATAGCCGTTGCTGCCGCGTCCACTGCGATCTGGTAGGCCGTCTCGAAGGCCACATGCTCCTTCTCGCATAGTGTGAGTGCAGACAGTGCGCAATTGGCCGGGTCCTTCATGGCGCACTGCAGTGCGAGTGTTCGGGCGCAGCTCGCCAGTTCCTCGCGCTGCCCGTAGTCCAGGCTGAGACGCAGTGCTGTGCCGTGAGACATGACTGCTGCAGCAACAATACTCGTAGCCTCAGTgggtgtgaacagtgtgtaccAACTCTGCAGAATGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370833 lncRNA upstream 58545 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 205264 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 287032 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 541253 1624563 ~ 1640726 (+) True LOC113543035
TU370723 lncRNA upstream 545256 1624563 ~ 1636723 (+) False LOC113543035
TU371292 lncRNA downstream 488756 2674433 ~ 2674646 (+) True G313443
XR_004580285.1 lncRNA downstream 545538 2731215 ~ 2736588 (+) True LOC117599939
TU371318 lncRNA downstream 549442 2735119 ~ 2735384 (+) True G313465
TU371354 lncRNA downstream 603565 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 756810 2942487 ~ 2945207 (+) True LOC113543325
XM_026941061.2 mRNA upstream 5614 2169048 ~ 2176365 (+) True urod
XM_026941059.2 mRNA upstream 13766 2147275 ~ 2168213 (+) True lyn
XM_026941060.2 mRNA upstream 13766 2147275 ~ 2168213 (+) False lyn
XM_026941306.2 mRNA upstream 36742 2133150 ~ 2145237 (+) False tgs1
XM_026941305.2 mRNA upstream 36742 2133213 ~ 2145237 (+) True tgs1
XM_026940816.2 mRNA downstream 82770 2268447 ~ 2274946 (+) True toe1
XM_026941102.2 mRNA downstream 112449 2298126 ~ 2318867 (+) False tmx3a
XM_034314711.1 mRNA downstream 112461 2298138 ~ 2318867 (+) False tmx3a
XM_026941100.2 mRNA downstream 120092 2305769 ~ 2318867 (+) True tmx3a
XM_026941358.2 mRNA downstream 134197 2319874 ~ 2325480 (+) True dsela
XR_003404395.2 other upstream 38666 2133214 ~ 2143313 (+) False tgs1
XR_003404390.2 other upstream 204670 1965740 ~ 1977309 (+) True c21h5orf22
TU370328 other upstream 1045959 1131883 ~ 1136020 (+) False paxip1
TU370320 other upstream 1050296 1128925 ~ 1131683 (+) False paxip1
TU370232 other upstream 1343457 820555 ~ 838522 (+) False jph1b
trnae-cuc_41 other downstream 308555 2494232 ~ 2494303 (+) True trnae-cuc_41
XR_004580350.1 other downstream 469523 2655200 ~ 2662399 (+) True LOC117599997
XR_004580351.1 other downstream 469523 2655200 ~ 2662399 (+) False LOC117599997
XR_004580352.1 other downstream 469523 2655200 ~ 2661421 (+) False LOC117599997
XR_004580353.1 other downstream 469523 2655200 ~ 2660562 (+) False LOC117599997

Expression Profile