RNA id: TU371318


Basic Information

Item Value
RNA id TU371318
length 266
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G313465
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2735119 ~ 2735384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGTGACCAGGCTTCATGCTTCGCTGCTCTCATGCTATTCACACTCAGTACTGTGGGGTTTCACACTTTTCTCTTTTGAGCAGTTTGAAGTGAGAATTACTCATTCCTTGTTGCAAACAcacttttattgatttttatattaaaacatgcaGGGCTGATATTTCAAGACATGATGAAATATTCtgtgaggaaacatttatttagcatagttggaaggagtctccagtgttagcagaCAGACTGGTCAGTGaatgactgtttctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371292 lncRNA upstream 60473 2674433 ~ 2674646 (+) True G313443
TU370833 lncRNA upstream 611685 2116324 ~ 2123434 (+) True G313052
TU370836 lncRNA upstream 758404 1974099 ~ 1976715 (+) True G313053
TU370796 lncRNA upstream 840172 1894702 ~ 1894947 (+) True G313016
TU370724 lncRNA upstream 1094393 1624563 ~ 1640726 (+) True LOC113543035
TU371354 lncRNA downstream 53858 2789242 ~ 2789496 (+) True G313494
XR_003404407.2 lncRNA downstream 207103 2942487 ~ 2945207 (+) True LOC113543325
TU371493 lncRNA downstream 340665 3076049 ~ 3076370 (+) True G313607
TU371707 lncRNA downstream 563714 3299098 ~ 3299306 (+) True G313796
TU371743 lncRNA downstream 745716 3481100 ~ 3489299 (+) False LOC113543208
XM_026941137.2 mRNA upstream 7051 2718759 ~ 2728068 (+) True ralab
XM_026941136.2 mRNA upstream 7051 2718759 ~ 2728068 (+) False ralab
XM_026940928.2 mRNA upstream 17421 2714439 ~ 2717698 (+) True c21h7orf25
XM_034314885.1 mRNA upstream 73698 2655200 ~ 2661421 (+) False LOC117599997
XM_034297694.1 mRNA upstream 79971 2645531 ~ 2655148 (+) True si:dkey-181m9.8
XM_026941205.2 mRNA downstream 73043 2808427 ~ 2834932 (+) True plcd1b
XM_026941204.2 mRNA downstream 82358 2817742 ~ 2834932 (+) False plcd1b
XM_026941250.2 mRNA downstream 124901 2860285 ~ 2871256 (+) True hhatla
XM_026940933.2 mRNA downstream 137145 2872529 ~ 2878715 (+) True klhl40a
XM_026940823.2 mRNA downstream 240262 2975646 ~ 2985302 (+) True bmi1b
TU371295 other upstream 59271 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 59271 2675322 ~ 2675848 (+) False G313445
XR_004580351.1 other upstream 72720 2655200 ~ 2662399 (+) False LOC117599997
trnat-agu_12 other downstream 153931 2889315 ~ 2889388 (+) True trnat-agu_12
trnas-aga_13 other downstream 890032 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 890576 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 892648 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 1211551 3946935 ~ 3947006 (+) True trnap-ugg_21

Expression Profile