Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU371493 |
| length | 322 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 1 |
| gene id | G313607 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 3076049 ~ 3076370 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005929 | cilium | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404407.2 | lncRNA | upstream | 130842 | 2942487 ~ 2945207 (+) | True | LOC113543325 |
| TU371354 | lncRNA | upstream | 286553 | 2789242 ~ 2789496 (+) | True | G313494 |
| XR_004580285.1 | lncRNA | upstream | 339461 | 2731215 ~ 2736588 (+) | True | LOC117599939 |
| TU371318 | lncRNA | upstream | 340665 | 2735119 ~ 2735384 (+) | True | G313465 |
| TU371292 | lncRNA | upstream | 401403 | 2674433 ~ 2674646 (+) | True | G313443 |
| TU371707 | lncRNA | downstream | 222728 | 3299098 ~ 3299306 (+) | True | G313796 |
| TU371743 | lncRNA | downstream | 404730 | 3481100 ~ 3489299 (+) | False | LOC113543208 |
| TU371775 | lncRNA | downstream | 447939 | 3524309 ~ 3524518 (+) | True | G313853 |
| TU371896 | lncRNA | downstream | 696700 | 3773070 ~ 3819909 (+) | True | G313949 |
| TU371923 | lncRNA | downstream | 730778 | 3807148 ~ 3808690 (+) | True | G313975 |
| XM_026940953.2 | mRNA | upstream | 56586 | 3014486 ~ 3019463 (+) | True | nebl |
| XM_026940823.2 | mRNA | upstream | 90747 | 2975646 ~ 2985302 (+) | True | bmi1b |
| XM_026940933.2 | mRNA | upstream | 197334 | 2872529 ~ 2878715 (+) | True | klhl40a |
| XM_026941250.2 | mRNA | upstream | 204793 | 2860285 ~ 2871256 (+) | True | hhatla |
| XM_026941205.2 | mRNA | upstream | 241117 | 2808427 ~ 2834932 (+) | True | plcd1b |
| XM_026941475.2 | mRNA | downstream | 3646 | 3080016 ~ 3082751 (+) | True | nrn1b |
| XM_026941397.2 | mRNA | downstream | 221974 | 3298344 ~ 3317951 (+) | True | sall3a |
| XM_026941285.2 | mRNA | downstream | 347197 | 3423567 ~ 3489367 (+) | False | LOC113543208 |
| XM_026941286.2 | mRNA | downstream | 350435 | 3426805 ~ 3489367 (+) | True | LOC113543208 |
| XM_026941367.2 | mRNA | downstream | 425697 | 3502067 ~ 3523213 (+) | True | atg5 |
| trnat-agu_12 | other | upstream | 186661 | 2889315 ~ 2889388 (+) | True | trnat-agu_12 |
| TU371295 | other | upstream | 400201 | 2675281 ~ 2675848 (+) | True | G313445 |
| TU371294 | other | upstream | 400201 | 2675322 ~ 2675848 (+) | False | G313445 |
| XR_004580352.1 | other | upstream | 414628 | 2655200 ~ 2661421 (+) | False | LOC117599997 |
| trnas-aga_13 | other | downstream | 549046 | 3625416 ~ 3625497 (+) | True | trnas-aga_13 |
| trnas-aga_14 | other | downstream | 549590 | 3625960 ~ 3626030 (+) | True | trnas-aga_14 |
| trnas-aga_16 | other | downstream | 551662 | 3628032 ~ 3628113 (+) | True | trnas-aga_16 |
| trnap-ugg_21 | other | downstream | 870565 | 3946935 ~ 3947006 (+) | True | trnap-ugg_21 |
| XR_004580320.1 | other | downstream | 1516070 | 4592440 ~ 4692816 (+) | False | LOC113543063 |
