RNA id: XM_026941286.2


Basic Information

Item Value
RNA id XM_026941286.2
length 5389
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC113543208
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3423567 ~ 3489367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATAAGAGCTCTGGTGTGACTGAACAGGATGTCAAAAGCcactgctctgctctgctctgctcgaGGAGCTGCTGATACACAGCGGCGCTTAAACACTCCTTCCCGGAGACGCTGAAGATGGGATCCGGCCATAAAGAGCCTGAATTTgatttcagctttctgtttgaGTACGGCAGCCGAGGCGGAGAGATGGAAATGGAGAGAGAGGCTTTTAGCTATACACCAAATGTTAGTTTGTCTCTCCCACTTGGCATGGCCAACCCCTGCCTGGCATCTCAGTACCACAATCTTCAATCAAGCCCCGTTATCTCGTCATGCCACCAAGCGAGCTATGGACTCCACGACAGCTCCATGGCTCCGAACTACTACTTCCCCGGGCTCCGTCCCAATGGCGCACCCCCTCTGGAGAGGCCACGCATTGAGATCACTTCCTATGGCCAGATGCCTGAGGAAGAGGTGGAGGAAAGTGGCACCATGGGCCCTGTGGCTAAGCGAGTCAACATCGTGACCTTGACTTTGCCCAGTGCTGATGGGTACCGCGACCCGAGCAGTCTGAGTCCAGCAAGTAGCTGCAACTCAGAGGCCTCGTATGAGTCTGGTTTCTACAACTATGAAAATTCACCCCAGAACTCACCCTGGCAGTCACCCTGTGTCTCGCCCAAAGGCTCATCCTCTTCGATGCTGTCTTGCCCACCTCATGGGCATGCCCCTGGTCCCTCCCCTCTTCACTCCCCTTCCACCTCCCCCAACGATGACATTGGAAGTCATGGGAAGCGGAAGTATAGCTTCAATGGCACCCCTTATGGGCACGCATCAGGCATCTCACCCAACCACTCACCCGGGGCTTCACCTCAGGGTTCACCAAGGCTTGAAGAAAGCAGGCTGGGAAACACTAACCAGTACACCAATTCAGCCATTGTGGCAGCCATCAACGCCCTCAGTACGGACGGCTTACCCGATCTCGGGGATGGTGTTCCCAACAAGAGCCGGAAGACCAGTGTAGAGCACAATGCCAGCATGAGCCTGAAGGTGGAGCCAGCAAACGACGATGTAGGCACAGAACTTGGACAGGAGGACTATACCAACTCCAACCGTATGCCATTCAAGAAGGAGAGCTATTGCTCAGGATTCCTGGATGTGCCACCTCATCCATACTCATGGCCCAAGCCCAAACCTTACCTCAGCCCGTCTCTGCCGGCTCTTGATTGGCAGCTGCCGTCCTGCTCAGGTCCCTACAATCTGCAGATCGAGGTGCAGCCCAAATCCCACCACCGTGCCCACTATGAGACAGAGGGCAGCCGAGGGGCAGTGAAGGCCCTGTCAGGAGGACACCCTGTGGTGCAGCTCTACGGCTACATGGAGAGTGAGCCACTAACACTCCAGCTCTTCATTGGCACGGCAGATGACCGACTTCTGCGACCACATGCTTTCTACCAGGTTCACCGCATCACCGGCAAGACTGTCTCCACTGCCAGCCATGAGGCCATGCAATCCAACACCAAGGTGCTGGAGATCCCTCTTCTGCCTGAGAACAACATGAGAGCCATAATCGACTGTGCTGGAATCCTGAAGCTCCGAAACTCAGACATTGAGCTGAGGAAGGGTGAGACAGACATTGGCCGCAAAAACACCAGAGTCCGAATGGTGTTCCGCGTCCACATCAACCAGCCCAGTGGCAGGACTGTGTCTCTACAAGTCGCATCCAACCCCATAGAGTGCTCCCAGCGCTCAGCACAGGAGCTGCCTTGGGTGGAGAAGCAGAGCCTGGACAGCTACCCAGCATCAGGAGGTAAAAGGATGCTCCTCAGCGGCCATAACTTCCTGCCTGAATCCAAAGTCATGTTCGTGGAGAAGGCCCAAGatGGACACCATGTATGGGAGACAGAAGCCAACGTGGACAAGGATTCTCGCAAATCTACTTCTTTGGTGGTAGAGATCCCTCCTTACCGCAATCAGAGGATATCCAGTGCCGTGCCTGTCAGCTTCTACGTCTGCAATGGCAAGAGGAAGAGGAGCCAGTATCAACGCTTTACCTACCTGCCGTGCAACGTTCCAATGATAAAGACAGAGCCGGCTGATGACTATGAGTCCCGGATGTCCATACATGCAAATCCCTACTTCGGCCAGCAGAGACTGCCTACCATGATGCCTTTGGATGACCCTGAGCCTTGCATGGTGGCCAGCTATGCCCCCTGTGCGTCTCGCCCCACCCCTATGCTATGCTCTTCCCCCAGCTCTAGCCCTAAGCTCCATGACCTGTCACCTGTACCCTTTCCTAAGTGCCTGAGCAACAGCCCTACACACTCCACCATGCCTGGAGGTATGGCATCCATGCAGGAGCCTCCCACCCACCATGGGCTGGCCCTGCCCAGCTCCCCTGACCCCACCTCCCTCACCATGCACCACCCTCAGGGTAGTCCACACCTTGGCAGCCCCTCATACCACCCTCTCTACCCCAACAGTAGTCCTTCCTCCTCTCCTACCTCCCATCCCTCAACACCAGGGGCTGCAGCTGAAAGCCCTTATCTGGCCACCTTTGGCTCCGCCCAGTCCAGAGGAAGCCCACCCACCCTGTTAGCAGATGATCACGCCTCCCCTGCGCTGCCTGTTACCATCAAACAAGAGCCGCAGGAGCTCGACCAAATGTATCTGGATGATGTCAATGAGATTATCAGGAATGACCTATCCTGCACTTCCTCTCACGGTCACTCATAGATGGCCATGAAAATGCCTGACGAAAGAAGGGACCAAGATGTCTTCCCTCTGAAGCCACCCGCAATTGGACAATCAGTCCTCGCGTTTAGAGGAACTTCTACGAGGACAACGTGACGTCATGTTTCACATGAAAGGCCTTAAATTCAACGGTGTATAAAAAGCACCATGAAAAGCAGTGACTGTTTAATTTGTTGGTTGTCcttcttcttgttcttgctCTTGCCTTAAAACATTAGAACTGCTCTACGGTGGACCAAGATCTCACAAAGACTTTCGTCTTCTTCTCTTCttgatgtgtgtgcgtgctggcGTTCAGGACAAACGCTGTCCGAATGGCGTTTCGTAGCGATTAATCCCAACTGGTTCATCAGACAGGGCAGATTCTGCAGTGCCTTGCTGCAAGTACAAATGGGGATGCAATTCCGTTCATcttcttcacttcacttcctTTTTTATACCTTTACACTTTGGTCGCTCATTTGTTTACAGTAAATATGAAAGGCTGgaatgtgtagatgtgtgtggaAACGTGTGAATAAAGTAGACCTGTGTTTAGACCATGTTTTTTTACaccatatacatataaaattgtcGGTAGTTGTctttgtataaaagtgtatgtTTAATGTGCTGTATATATGCATTAATGAACCTTTGTCATTCCCTGTGTAGTGCATGGTCTCTTGGTGAAATCGAACCACCAATTGGACTACCTCCCCGATGCCCTCTTACCCCAGAACTATAGCAAGAAACAAAGTGGTTAACAAGCCTTGACAAAGAATCGCGGGATTTCagttgaaataaaagaaaagcactTATTCCTGTGGCAGTGGTCACTAACCAATTTCCTGGAGATCATGGCTCTGTCCCAAACTTTAGGAGTCATAACAAGTTAGGCAAAATGGCAGTTGTAGCATTTGTCTAAGACTAGCAAACATTAGAATATAGTAgctgtgtgttcatgttaaatGTTAGCACATCTCTTCCTCATCTTTAACAGAACTGATTTTACAATTTTGTACCACAGCACTCTTCAGTAATCCATtccgattggtcagagggtgttgattcattttctataccaACACAGTTCGGACAGTGGCTCCGCATGCAATggttttattaatgcactcattctaatacagtatagtttctatggtaacacaaagtttgtatggtggatgctccacgtaaacagattttaaaagacGTATGTAATTGTCGATATCGTGTCATTTTTACttgtgaggaaatgtttatttagcatttttggaaggagtctccagtgtgagtgttttgtaacagtcagcggtAAAGTTGTAAAGGTTTTTTTGTCAGGATTGAGGGCTTTTTTGCagggtttttattattattaacgtcataagaaagacaaaaagaaagccTGGTGaaggaaggactgtttatagctgctaacaaattgctgtggagtAAGTGGAATAAACCAGTGGAatatgctgttactggaaaataatgaacatgcGACCccattgtttattattcttataACAGTACAACACCAACTGTGTTTTTCCTTACTTTGGACGAATGGCATATTCATACTAGTTGCCTCTGTCAGGATTTAGTCAAGTGGGCTGAGAACTGCTAATTAGCTAGATGTCTATTGTTAAATCATGTGCAATTTAGAGAGAGAGTATCTAAGCACAActttaaagttaaaaattacGCTCGGTTTTTGCTACACCACTAGCTGCTTGAATAAAGTGTCGATTAGCTGGATAAGGCATGTTCGATTTGGCTTTCAAACTGGGACAGATCTCCAGCGACAGGGTTCGTGACCACTCCAAGGACACTGGCCCTGCAAACAAGCAAATGCATCCCGCTCCAGGCAAACTAactcattttgttttaattaaaccaTTTGCGCACTGAGCTATCATTTCTCTAATGGGACTTTTTCCCCCAGCGCTTTCACACAAACAGAACTAGAATAATATAGCAAAGCCTGTTATCCTTTAATAAGCATACAGCAATATGTGTAATTAATCGGCGGTTGAGGTTGGGTTTCATGGAGACAAAGACCAGCAATAAATGATGCGACGACACCAAAGGATTTATTATGTAATCGATGTTTTCTATAACCAGATGTGTGTCCCTAAAGATGAAGGAGTGGACCTTATTTGAGCGTCTTGCCTCTTTGACGGATATCCTGATCCCAGTCCTTGGCAACCCAAGACTTAATAACGAAATAATAAGACGTGTTAGACGTGACAAACCTCAGACACGTCCAGAGCTTTCAGTGTCCAGGACTGGAACTGGGAACGATTGTCTAGAAACTTCTACAATACCAAAACTGAGAGGTCTGCTCTCATCGAAGGCTCACTTCTCTTCTAGCGAAAGATGTCTTTCTAACGCATGCACTTAATATCGATTTCCAATGTTTCGTTCATTATTGTGATACGGATACTTTGGGATACTTTTCTTCCTGTTGTATATGAACGCATGGTCGTGTGCCTTATTCTGCTAATCTGTTAAACAAGCTGATTGTATTCTTTATTTCCCCCTCAATTTAGGCACACGGTGGATTCAATCTTGTATCTTCTCTAATATGGAATATTTATAGAAATCTCAAGGGTATtttatgtatacagtatgcTTTCTGctaattaaaagaataaaaaaattatttaaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371707 lncRNA upstream 127499 3299098 ~ 3299306 (+) True G313796
TU371493 lncRNA upstream 350435 3076049 ~ 3076370 (+) True G313607
XR_003404407.2 lncRNA upstream 481598 2942487 ~ 2945207 (+) True LOC113543325
TU371354 lncRNA upstream 637309 2789242 ~ 2789496 (+) True G313494
TU371318 lncRNA upstream 691421 2735119 ~ 2735384 (+) True G313465
TU371775 lncRNA downstream 34942 3524309 ~ 3524518 (+) True G313853
TU371896 lncRNA downstream 283703 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA downstream 317781 3807148 ~ 3808690 (+) True G313975
TU371944 lncRNA downstream 356490 3845857 ~ 3846095 (+) True G313990
XR_004580328.1 lncRNA downstream 398660 3888027 ~ 3895685 (+) True LOC117599982
XM_026941397.2 mRNA upstream 108854 3298344 ~ 3317951 (+) True sall3a
XM_026941475.2 mRNA upstream 344054 3080016 ~ 3082751 (+) True nrn1b
XM_026940953.2 mRNA upstream 407342 3014486 ~ 3019463 (+) True nebl
XM_026940823.2 mRNA upstream 441503 2975646 ~ 2985302 (+) True bmi1b
XM_026940933.2 mRNA upstream 548090 2872529 ~ 2878715 (+) True klhl40a
XM_026941367.2 mRNA downstream 12700 3502067 ~ 3523213 (+) True atg5
XM_034314852.1 mRNA downstream 152948 3642315 ~ 3646672 (+) True LOC113543357
XM_026941244.2 mRNA downstream 158380 3647747 ~ 3662687 (+) True nt5c3a
XM_026941245.2 mRNA downstream 166667 3656034 ~ 3662687 (+) False nt5c3a
XM_026941277.2 mRNA downstream 323886 3813253 ~ 3816854 (+) True pmvk
trnat-agu_12 other upstream 537417 2889315 ~ 2889388 (+) True trnat-agu_12
TU371295 other upstream 750957 2675281 ~ 2675848 (+) True G313445
TU371294 other upstream 750957 2675322 ~ 2675848 (+) False G313445
XR_004580352.1 other upstream 765384 2655200 ~ 2661421 (+) False LOC117599997
trnas-aga_13 other downstream 136049 3625416 ~ 3625497 (+) True trnas-aga_13
trnas-aga_14 other downstream 136593 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_16 other downstream 138665 3628032 ~ 3628113 (+) True trnas-aga_16
trnap-ugg_21 other downstream 457568 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 1103073 4592440 ~ 4692816 (+) False LOC113543063

Expression Profile