Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU371896 |
| length | 1241 |
| lncRNA type | sense_over |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G313949 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 3773070 ~ 3819909 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU371775 | lncRNA | upstream | 248552 | 3524309 ~ 3524518 (+) | True | G313853 |
| TU371743 | lncRNA | upstream | 283771 | 3481100 ~ 3489299 (+) | False | LOC113543208 |
| TU371707 | lncRNA | upstream | 473764 | 3299098 ~ 3299306 (+) | True | G313796 |
| TU371493 | lncRNA | upstream | 696700 | 3076049 ~ 3076370 (+) | True | G313607 |
| XR_003404407.2 | lncRNA | upstream | 827863 | 2942487 ~ 2945207 (+) | True | LOC113543325 |
| TU371944 | lncRNA | downstream | 25948 | 3845857 ~ 3846095 (+) | True | G313990 |
| XR_004580328.1 | lncRNA | downstream | 68118 | 3888027 ~ 3895685 (+) | True | LOC117599982 |
| TU372207 | lncRNA | downstream | 176593 | 3996502 ~ 4000314 (+) | True | G314222 |
| TU372364 | lncRNA | downstream | 470345 | 4290254 ~ 4293729 (+) | True | G314362 |
| TU372366 | lncRNA | downstream | 474956 | 4294865 ~ 4295074 (+) | True | G314364 |
| XM_026941244.2 | mRNA | upstream | 110383 | 3647747 ~ 3662687 (+) | True | nt5c3a |
| XM_026941245.2 | mRNA | upstream | 110383 | 3656034 ~ 3662687 (+) | False | nt5c3a |
| XM_034314852.1 | mRNA | upstream | 126398 | 3642315 ~ 3646672 (+) | True | LOC113543357 |
| XM_026941367.2 | mRNA | upstream | 249857 | 3502067 ~ 3523213 (+) | True | atg5 |
| XM_026941285.2 | mRNA | upstream | 283703 | 3423567 ~ 3489367 (+) | False | LOC113543208 |
| XM_026940992.2 | mRNA | downstream | 142846 | 3962755 ~ 3968351 (+) | False | tagln |
| XM_026940991.2 | mRNA | downstream | 142846 | 3962755 ~ 3968351 (+) | False | tagln |
| XM_026940989.2 | mRNA | downstream | 142847 | 3962756 ~ 3968351 (+) | True | tagln |
| XM_026940990.2 | mRNA | downstream | 142848 | 3962757 ~ 3968351 (+) | False | tagln |
| XM_034314876.1 | mRNA | downstream | 354884 | 4174793 ~ 4183429 (+) | True | LOC113543359 |
| trnas-aga_16 | other | upstream | 144957 | 3628032 ~ 3628113 (+) | True | trnas-aga_16 |
| trnas-aga_14 | other | upstream | 147040 | 3625960 ~ 3626030 (+) | True | trnas-aga_14 |
| trnas-aga_13 | other | upstream | 147573 | 3625416 ~ 3625497 (+) | True | trnas-aga_13 |
| trnat-agu_12 | other | upstream | 883682 | 2889315 ~ 2889388 (+) | True | trnat-agu_12 |
| TU371295 | other | upstream | 1097222 | 2675281 ~ 2675848 (+) | True | G313445 |
| trnap-ugg_21 | other | downstream | 127026 | 3946935 ~ 3947006 (+) | True | trnap-ugg_21 |
| XR_004580320.1 | other | downstream | 772531 | 4592440 ~ 4692816 (+) | False | LOC113543063 |
| TU372694 | other | downstream | 1117139 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372695 | other | downstream | 1117139 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372696 | other | downstream | 1117139 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
