RNA id: TU371923


Basic Information

Item Value
RNA id TU371923
length 1475
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G313975
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3807148 ~ 3808690 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCTTTATTGCTCCATTAACACAGGCACAGGAAAGAACATTCCGGTTTAAGATAACACATGAAGAGCAAAAGAGcatttatatttcaaaatactGGCCTTGACTCTTAGGTCTGAGCGAATGTTCAAGCCCATGTTTATCAGCTTTTCAGTTAAAATCTCTACACAGAGCTATAACTAAGGCTAAAATCTTTTTTACACTCACACTGGTCAATTCATACAATATTTCCTTCTTTATCTGTACAGAAGAAGCAATTGTCATGTCATGTGACCTTATTTGACAGCAGCTTCAGATAAACTTCATAAGTGCAGATGAATAACGAGGATGCATCGTGACAGATGTGAAGTTCACAGCAGGCTGGTGTCACAAAattacagcaaaacaaacaaacaaacaaacaaaaaaatcaaacttcACTTGCACGAGGTGCATTTATACACAGTTTAAGCGAACCGAAGATTAAATGTCCACTGCACACGGCGTGAATATCTCCCTTCGTTATCATCGTCAGTGTCACGCTGCTTGAGGGGGCGTGTCTGTTTACTACGCAGGACGTCAGTGAACCTGATATTGTGTATTTCGAATAAATTATCTTCTTATTCAAGTTAACTTAGTTCTAAAATATTTGTGTGAAGATAAAATATTCCCgttttttgtctatttacagCGCGTTCCTGCAGCGATTAATTTTTCGTCCAGACAAAAATATGCGTAAGCAGTACAATGTGAACGTACGCAACTGCGTACAGACGATGTAAAGTTGTCGTTTGTCGATTAGTCGCTGATCTCACTgacataacaaaaaataaataaaattatctcAAAGTTCTCACCGCTTGCTATCTCACAATCCATAGCGCATTTTTTATTCGCTACTCCCATTTTATTCGCTACTCCTAGTAATGCATTTGTGCACAGTGGACATGTAGCATATGGATACTGCCCCCTTGTGGACAATCTCCCACCTGTTAAATGTAAGCGAGTTACAAAAGCTGTACAGGATCCTGAATGTGCCGGTGTGCCTGTGTCCACAGGGGTGGTGCTTAAGTTGATCGTGCCAATCGTGATCAATCACAACTAGTATCATGATAGTATGACATCACAACCAAAATACACTGCAAAACTGAACACATTATTTAAGCACTACACTGagctgaaaaaatgaaaacacaagcTAGTGGTTATATGATCACAAAAACAAGCCAAACTAGAATATATATGGTATTGATATACAACCATATGAATGCTTTTTcacataatcttttttttttatcctgtaacaagccttaaaatatactttaatgaaataaaaataatctaataaaaatacaaactagaacttctgattttatatatatatatatataggagcTTTGAGGGAAAATAAGAAAGAGAACAGTGCTGAGTGAGGGATGATGGGAAGACGTCAATCGTCATCGCTGTCGCTGCCTGATTCGCTCAGCTGCAGATCGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371775 lncRNA upstream 282630 3524309 ~ 3524518 (+) True G313853
TU371743 lncRNA upstream 317849 3481100 ~ 3489299 (+) False LOC113543208
TU371707 lncRNA upstream 507842 3299098 ~ 3299306 (+) True G313796
TU371493 lncRNA upstream 730778 3076049 ~ 3076370 (+) True G313607
XR_003404407.2 lncRNA upstream 861941 2942487 ~ 2945207 (+) True LOC113543325
TU371944 lncRNA downstream 37167 3845857 ~ 3846095 (+) True G313990
XR_004580328.1 lncRNA downstream 79337 3888027 ~ 3895685 (+) True LOC117599982
TU372207 lncRNA downstream 187812 3996502 ~ 4000314 (+) True G314222
TU372364 lncRNA downstream 481564 4290254 ~ 4293729 (+) True G314362
TU372366 lncRNA downstream 486175 4294865 ~ 4295074 (+) True G314364
XM_026941244.2 mRNA upstream 144461 3647747 ~ 3662687 (+) True nt5c3a
XM_026941245.2 mRNA upstream 144461 3656034 ~ 3662687 (+) False nt5c3a
XM_034314852.1 mRNA upstream 160476 3642315 ~ 3646672 (+) True LOC113543357
XM_026941367.2 mRNA upstream 283935 3502067 ~ 3523213 (+) True atg5
XM_026941286.2 mRNA upstream 317781 3426805 ~ 3489367 (+) True LOC113543208
XM_026941277.2 mRNA downstream 4563 3813253 ~ 3816854 (+) True pmvk
XM_026940992.2 mRNA downstream 154065 3962755 ~ 3968351 (+) False tagln
XM_026940991.2 mRNA downstream 154065 3962755 ~ 3968351 (+) False tagln
XM_026940989.2 mRNA downstream 154066 3962756 ~ 3968351 (+) True tagln
XM_026940990.2 mRNA downstream 154067 3962757 ~ 3968351 (+) False tagln
trnas-aga_16 other upstream 179035 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 181118 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 181651 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 917760 2889315 ~ 2889388 (+) True trnat-agu_12
TU371294 other upstream 1131300 2675322 ~ 2675848 (+) False G313445
trnap-ugg_21 other downstream 138245 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 783750 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 1128358 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 1128358 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 1128358 4937048 ~ 4958120 (+) False LOC113543089

Expression Profile