RNA id: TU371944


Basic Information

Item Value
RNA id TU371944
length 239
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G313990
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3845857 ~ 3846095 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caattttcattcattttcacgtAATGTTTTTCACAATAAAttgattttcatgtgatttttcacaCATGCTTTTCTCACGATTCATTTCTTCACATGTACTGCATGTCTTTATTATTACATGTgaatatttgtgattttttacatgattaatttatttattgattttctttccACAAGATTCGTTGTtcctgtgtgattttttttttttaattcatttttcatgtgattttttaaatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU371896 lncRNA upstream 25948 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA upstream 37167 3807148 ~ 3808690 (+) True G313975
TU371775 lncRNA upstream 321339 3524309 ~ 3524518 (+) True G313853
TU371743 lncRNA upstream 356558 3481100 ~ 3489299 (+) False LOC113543208
TU371707 lncRNA upstream 546551 3299098 ~ 3299306 (+) True G313796
XR_004580328.1 lncRNA downstream 41932 3888027 ~ 3895685 (+) True LOC117599982
TU372207 lncRNA downstream 150407 3996502 ~ 4000314 (+) True G314222
TU372364 lncRNA downstream 444159 4290254 ~ 4293729 (+) True G314362
TU372366 lncRNA downstream 448770 4294865 ~ 4295074 (+) True G314364
TU372412 lncRNA downstream 533542 4379637 ~ 4384865 (+) True G314402
XM_026941277.2 mRNA upstream 29003 3813253 ~ 3816854 (+) True pmvk
XM_026941244.2 mRNA upstream 183170 3647747 ~ 3662687 (+) True nt5c3a
XM_026941245.2 mRNA upstream 183170 3656034 ~ 3662687 (+) False nt5c3a
XM_034314852.1 mRNA upstream 199185 3642315 ~ 3646672 (+) True LOC113543357
XM_026941367.2 mRNA upstream 322644 3502067 ~ 3523213 (+) True atg5
XM_026940992.2 mRNA downstream 116660 3962755 ~ 3968351 (+) False tagln
XM_026940991.2 mRNA downstream 116660 3962755 ~ 3968351 (+) False tagln
XM_026940989.2 mRNA downstream 116661 3962756 ~ 3968351 (+) True tagln
XM_026940990.2 mRNA downstream 116662 3962757 ~ 3968351 (+) False tagln
XM_034314876.1 mRNA downstream 328698 4174793 ~ 4183429 (+) True LOC113543359
trnas-aga_16 other upstream 217744 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 219827 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 220360 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 956469 2889315 ~ 2889388 (+) True trnat-agu_12
TU371294 other upstream 1170009 2675322 ~ 2675848 (+) False G313445
trnap-ugg_21 other downstream 100840 3946935 ~ 3947006 (+) True trnap-ugg_21
XR_004580320.1 other downstream 746345 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 1090953 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 1090953 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 1090953 4937048 ~ 4958120 (+) False LOC113543089

Expression Profile