RNA id: TU372364


Basic Information

Item Value
RNA id TU372364
length 3476
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G314362
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4290254 ~ 4293729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caatttgccagcaattacattttttaataatcatagAACAGCATAttctactttttattcatttatagttacatctgtCCATGAAAAAGTAGTTCCTGTCATCATgaatcctgaagactttcctttaCCAGAAATCttactaactgttacaaagacCTGttactggagactcattccataaatgctaaataaaagtcACTTTAAAGACCTTAAAGTAGAACAATGCGGATGCCTCCACTGCCTACAGTTCTACTCCTTCTTGTTATTAATTGGTATGAttcaaatacccttaaaatatactccaaacaggaaggaagctattttAGACAACTGACCTTGCTCtgaccttgatcctgtttggaACAATTCCAAAATCCTCCATGTAAACATTCAACCACgtgttcttgagatattgtaTTATTGAGAATTTCAAgtggatagacagacaaacaacCAGAAAGACAAATGGATGGCAAAAAACTTAGATACCCAAGAAATAGGCCTGGAGTTTCTGAACATGAATGTTTGAATAGCAactctgtatgacaaacagaaagaaagctcttgaagaaaaactgtttaaGTGTTTGGATTAATTCCAAAAACTATTTCagtgtttggatcaattccaaaatctagtccATAGATCTAGTtcatcaattccaaaatctcaGGTCATCTGCCGGTTACGATgctaattccatataaatcttacaaacattcaaccactcattcttgagatatcgaGAATCAAGTTATTGAGAATCTTGGACCCTAGTGGCTgaagcataaaaaaaattcaccatagcaacaattacacattgGGCATTTATTACAGAACTGATTTACATGAATGAATAACTAGACAATATGAACTGAATTTTGAGCAGATGCCAAGATACAAGTCAACTttacattaaaggaatactcctgCATTTTTCAGTGTACTCTCTTTtcactgcatctgtagtgtatgcGTAGTTACCATGGAAAATCAGTTCAGCGTTTCCCTGTAGTGACAATACATGTTAACTTGAAACTCACTTATTAATGGaaatctaagggcagttgttgaattccGTTAAACAAACACATGTTTATGGGTTTGTCATTCAAGTATTTGTAAATGCAGCTCTACATGTATGTAATTCACACTTTCAAGGATTTTCAGAAGGAAGAATATGTGGTTATGTCTTACCAACATAGCAGTGTGGGCACATGGGTGCCACAAAACCTTCGGGAAATCGGAAGTAACTGGATTTACTTTACACTGTATTGCTCCACCACACAGAAATTGTATGAAACTCTAAAGAACAGCTTTTGAGAGAGTTTCTCTTATATCTGACTCTAACACATTTCTTGTTAGATTGCAACAGTTGTAATTGTCAAATTAGCATCAtgcagacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatactcgaCAACTGCCCTTAGATTGCTATTCTATAGGTTCAATAGGTTTTCAGTTCTTTCCTTATTACaagaaaacaaatgtaatttttagTTTGTACTAATCACTCATACAGTATAGATACAAGGACAGAGGTTATGCTGAAAAACGCTGGTGTATTCCTTTAAAACAGGGATGCCAAAGTCAATTTCTGCCTGTGCCACATCCTCATTTTGTTTTAAGGTCCATAatgtaaagttgtttttttttaaacatattatcTCTTCTATCACATACTAATAACATTACTAGGAAAAAGGAGGGATAACAGATACTAGTCACCTGTACTATGCCTAGGTGATAACATTTAATGAACTGATTAAATggtattttttatgtttaatgactgttttccaaatataaaaaatttgttaataaagcGATTTAAGAAGAACACTCACCAGATTATCTCTGCTAAGAATATACATGTCCCATTCCCCATTTCCCTTGTCTTCACAATCCATCACCTGTTTTTCAACATATAGTATGTGCAGGTTTCTACACTGGCGATGCATGTTGGGTTTTTGGAGTCAATCAGTGCATCACACTAAAGACAATCCCTGAcacatttctgaatttttttagaCATGGGTCTGGCAAGCATTAGATGCAGGACATACTGCAACTGATTTTATCCAGGGTTTCAGCACTGTGAGATGTGAGCTCATACCTGCTGTATGTGGGTAACTGGAGTGAATTCTAGACTGCGTGAAAATGTTGCGTAACAGGaggttttaatattttgcattgGTTTTTTTCATGTCTGTGCATGCTGAATGAAACAAGGCTGCAAGCCATGTTTGGCCCACAGGCCTTGAATTTGACagctttaaaatatatagaagTGAAAACGGTtacaaaaaacacttttttttgctaGAACTTTCTCTAGCTCTGAATAATGGCATCGGACTAAACTCAGAAGTGTTTTTGCTTATATGACCGCGATACTTCACAAACCTGTATCTACACATCTATattaaaaaccttttaaaacttGTAATGTGATACTTCTAAAATAGGTGTTACCAGATTTATTGTGTACTAGGGTACAAATGGCATATCTGACCAGATTGCATATATTCTGCTGCTAACACACTCTACAAAACTGGCAcactctcttcttcctcctcctctttttctctgctgATTTTGTACTACTCAGATGTGGTAGGGCAGGGGGGAGGTTGTTAATAAGCTCAAACAttgtaaatgtgcaaaatgaaaTCTCATCATATGCTGTCTTTGTGCCATTTTCAAATAAACAGGCGAAAACAGGAACTGGTGGTTCCCCTGTAGATGCCAGGTCTACATAGGCCAGGTCTGAGTACGCGCTTGGACCCTTGTAGATGACCCACGGCCCTCTCCAGCTATCCGGGTCACGGGGCCGCACGCTGAGGTACAAGCCAAGATCCCGGCGAGCCTTGGTCCAGGTTGGGTGCCCATACACCACCCATGTTGGTGTTAAAAAATTCTGGAACTGGCTTGCTGCAGTGGAAGGTGAGCAAGTAGTGGACATCATCCGCTGGACTTCACCCAGGTTGGACTTCTGGAGGAGGTGGAAAGGTGCAGGAAAGCCAATCACACTCCCATGACAGCCATTTCTAGGCTCCACAAGCTTGTGCACCAGTTGCCCTCTTTGGAAAGCAGTGCCATCTTCAAAACTGAGGGCCTGAACACGGGAGCCAAGGGTACTGCGGGCGTTACAGTAGAGCACATTGGTCCCACTCTCTTCGTCCAGTGAGACCAGCTGACACTCCAGGCATTCAGGCTCTGGCACTGTTTTGCCGAAATGCCACGTCCTGCCATGTGTATCACTGTAGAAGCAGAAGGAGTGGGGAGTGGTTTTACAGATCTTTCCGAAGCACTCCTTGCAGTCAATGTGGTAGGCGTAGGCTGGGATCAGCAGACGGCCGGATTTTAACTGGATCCCATGGCCTGGGCCGAGAGCAAAGGTAGCCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372207 lncRNA upstream 289940 3996502 ~ 4000314 (+) True G314222
XR_004580328.1 lncRNA upstream 394569 3888027 ~ 3895685 (+) True LOC117599982
TU371944 lncRNA upstream 444159 3845857 ~ 3846095 (+) True G313990
TU371896 lncRNA upstream 470345 3773070 ~ 3819909 (+) True G313949
TU371923 lncRNA upstream 481564 3807148 ~ 3808690 (+) True G313975
TU372366 lncRNA downstream 1136 4294865 ~ 4295074 (+) True G314364
TU372412 lncRNA downstream 85908 4379637 ~ 4384865 (+) True G314402
TU372416 lncRNA downstream 223872 4517601 ~ 4527820 (+) True G314404
TU372431 lncRNA downstream 395240 4688969 ~ 4762095 (+) False LOC113543063
TU372650 lncRNA downstream 486209 4779938 ~ 4780145 (+) True G314609
XM_026940925.2 mRNA upstream 144 4283167 ~ 4290110 (+) False LOC113543011
XM_026940924.2 mRNA upstream 144 4283170 ~ 4290110 (+) False LOC113543011
XM_026940926.2 mRNA upstream 144 4285191 ~ 4290110 (+) True LOC113543011
XM_026940923.2 mRNA upstream 144 4286801 ~ 4290110 (+) False LOC113543011
XM_026940971.2 mRNA upstream 13296 4267090 ~ 4276958 (+) False LOC113543038
XM_026940950.2 mRNA downstream 7070 4300799 ~ 4308052 (+) True wdr53
XM_026941425.2 mRNA downstream 22014 4315743 ~ 4350544 (+) False LOC113543315
XM_026941423.2 mRNA downstream 22016 4315745 ~ 4350544 (+) True LOC113543315
XM_026941424.2 mRNA downstream 22016 4315745 ~ 4350544 (+) False LOC113543315
XM_026941172.2 mRNA downstream 83265 4376994 ~ 4533974 (+) True cux1b
trnap-ugg_21 other upstream 343248 3946935 ~ 3947006 (+) True trnap-ugg_21
trnas-aga_16 other upstream 662141 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 664224 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 664757 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 1400866 2889315 ~ 2889388 (+) True trnat-agu_12
XR_004580320.1 other downstream 298711 4592440 ~ 4692816 (+) False LOC113543063
TU372694 other downstream 643319 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 643319 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 643319 4937048 ~ 4958120 (+) False LOC113543089
TU372849 other downstream 794372 5088101 ~ 5091097 (+) False sptssb

Expression Profile