Item | Value |
---|---|
RNA id | TU372728 |
length | 510 |
lncRNA type | inter_gene |
GC content | 0.39 |
exon number | 3 |
gene id | G314675 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047615.1 |
NCBI id | CM018561.1 |
chromosome length | 21248730 |
location | 4978021 ~ 4978966 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
XR_004580298.1 | lncRNA | upstream | 84743 | 4884210 ~ 4893278 (+) | True | LOC117599956 |
TU372681 | lncRNA | upstream | 131304 | 4846192 ~ 4846717 (+) | True | G314636 |
TU372673 | lncRNA | upstream | 176918 | 4800652 ~ 4801103 (+) | True | G314628 |
TU372656 | lncRNA | upstream | 189607 | 4788100 ~ 4788414 (+) | False | pou3f2b |
TU372650 | lncRNA | upstream | 197876 | 4779938 ~ 4780145 (+) | True | G314609 |
TU372866 | lncRNA | downstream | 143732 | 5122698 ~ 5123402 (+) | True | G314785 |
TU372867 | lncRNA | downstream | 237406 | 5216372 ~ 5216588 (+) | False | kpna4 |
TU372881 | lncRNA | downstream | 241680 | 5220646 ~ 5221823 (+) | True | G314800 |
TU372889 | lncRNA | downstream | 344358 | 5323324 ~ 5323675 (+) | True | G314807 |
TU372887 | lncRNA | downstream | 389668 | 5368634 ~ 5370815 (+) | False | si:dkeyp-97b10.3 |
XM_026941103.2 | mRNA | upstream | 19900 | 4901470 ~ 4958121 (+) | True | LOC113543089 |
XM_026941328.2 | mRNA | upstream | 188186 | 4787848 ~ 4789835 (+) | True | pou3f2b |
XM_026941049.2 | mRNA | upstream | 285205 | 4592445 ~ 4692816 (+) | False | LOC113543063 |
XM_026941051.2 | mRNA | upstream | 285450 | 4592441 ~ 4692571 (+) | True | LOC113543063 |
XM_026941052.2 | mRNA | upstream | 288999 | 4592442 ~ 4689022 (+) | False | LOC113543063 |
XM_026940941.2 | mRNA | downstream | 53283 | 5032249 ~ 5036445 (+) | True | LOC113543019 |
XM_026941160.2 | mRNA | downstream | 81064 | 5060030 ~ 5070433 (+) | False | rabgef1l |
XM_034314758.1 | mRNA | downstream | 81209 | 5060175 ~ 5070433 (+) | True | rabgef1l |
XM_026941161.2 | mRNA | downstream | 91652 | 5070618 ~ 5073139 (+) | True | LOC113543113 |
XM_026940921.2 | mRNA | downstream | 108873 | 5087839 ~ 5091273 (+) | True | sptssb |
TU372694 | other | upstream | 19901 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
TU372695 | other | upstream | 19901 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
TU372696 | other | upstream | 19901 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
XR_004580320.1 | other | upstream | 285205 | 4592440 ~ 4692816 (+) | False | LOC113543063 |
trnap-ugg_21 | other | upstream | 1031015 | 3946935 ~ 3947006 (+) | True | trnap-ugg_21 |
TU372849 | other | downstream | 109135 | 5088101 ~ 5091097 (+) | False | sptssb |
trnat-agu_13 | other | downstream | 240579 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
TU373444 | other | downstream | 915538 | 5894504 ~ 5896830 (+) | False | shox2 |
TU373737 | other | downstream | 1247751 | 6226717 ~ 6227240 (+) | True | G315581 |
XR_004580329.1 | other | downstream | 1958374 | 6937340 ~ 6944608 (+) | False | LOC113543138 |