RNA id: TU372728



Basic Information


Item Value
RNA id TU372728
length 510
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G314675
representative True

Chromosome Information


Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4978021 ~ 4978966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


cacacacacacatgttgatAAAGAGTATGGTGGATTCCATGAAAGTTCGATGCTAAGTGCAATTACAGTGTAACTGTAGTCATATGGAGgcttttcttcatattttgttAACACATCTAAGGGAAATGTTCCTATCAGCTCTGTCTCATTTCCAGACTATCCATATAAAAGCTTTAACAGCTACCTCTTAGCTAGACAGTGTTCTCACAGCTTTAACCCCTTGAACATGTCATGTGTTtgcaattttcatttaaatgcacCAAAAACCAATACTGTGCAATCCTACATTAGTACTACTACATTAGTATGACTCCTAAAGTCCTGCTGTGCTGACTGTTGATTGCTGAATCCTGGATATTTTTTGTGGATGATTGTGGAAAGATTAGGGGCAGAACTTGCCATACAGAACACTGCTGACCCACTTATTCACCAGTTTTTATAAACCTGCATTTAGCTAATGAGCAattcataaatgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagagaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_004580298.1 lncRNA upstream 84743 4884210 ~ 4893278 (+) True LOC117599956
TU372681 lncRNA upstream 131304 4846192 ~ 4846717 (+) True G314636
TU372673 lncRNA upstream 176918 4800652 ~ 4801103 (+) True G314628
TU372656 lncRNA upstream 189607 4788100 ~ 4788414 (+) False pou3f2b
TU372650 lncRNA upstream 197876 4779938 ~ 4780145 (+) True G314609
TU372866 lncRNA downstream 143732 5122698 ~ 5123402 (+) True G314785
TU372867 lncRNA downstream 237406 5216372 ~ 5216588 (+) False kpna4
TU372881 lncRNA downstream 241680 5220646 ~ 5221823 (+) True G314800
TU372889 lncRNA downstream 344358 5323324 ~ 5323675 (+) True G314807
TU372887 lncRNA downstream 389668 5368634 ~ 5370815 (+) False si:dkeyp-97b10.3
XM_026941103.2 mRNA upstream 19900 4901470 ~ 4958121 (+) True LOC113543089
XM_026941328.2 mRNA upstream 188186 4787848 ~ 4789835 (+) True pou3f2b
XM_026941049.2 mRNA upstream 285205 4592445 ~ 4692816 (+) False LOC113543063
XM_026941051.2 mRNA upstream 285450 4592441 ~ 4692571 (+) True LOC113543063
XM_026941052.2 mRNA upstream 288999 4592442 ~ 4689022 (+) False LOC113543063
XM_026940941.2 mRNA downstream 53283 5032249 ~ 5036445 (+) True LOC113543019
XM_026941160.2 mRNA downstream 81064 5060030 ~ 5070433 (+) False rabgef1l
XM_034314758.1 mRNA downstream 81209 5060175 ~ 5070433 (+) True rabgef1l
XM_026941161.2 mRNA downstream 91652 5070618 ~ 5073139 (+) True LOC113543113
XM_026940921.2 mRNA downstream 108873 5087839 ~ 5091273 (+) True sptssb
TU372694 other upstream 19901 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other upstream 19901 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other upstream 19901 4937048 ~ 4958120 (+) False LOC113543089
XR_004580320.1 other upstream 285205 4592440 ~ 4692816 (+) False LOC113543063
trnap-ugg_21 other upstream 1031015 3946935 ~ 3947006 (+) True trnap-ugg_21
TU372849 other downstream 109135 5088101 ~ 5091097 (+) False sptssb
trnat-agu_13 other downstream 240579 5219545 ~ 5219618 (+) True trnat-agu_13
TU373444 other downstream 915538 5894504 ~ 5896830 (+) False shox2
TU373737 other downstream 1247751 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 1958374 6937340 ~ 6944608 (+) False LOC113543138

Expression Profile