Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU372867 |
| length | 217 |
| lncRNA type | sense_over |
| GC content | 0.33 |
| exon number | 1 |
| gene id | kpna4 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 5201021 ~ 5216591 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU372866 | lncRNA | upstream | 92970 | 5122698 ~ 5123402 (+) | True | G314785 |
| TU372728 | lncRNA | upstream | 237406 | 4978021 ~ 4978966 (+) | True | G314675 |
| XR_004580298.1 | lncRNA | upstream | 323094 | 4884210 ~ 4893278 (+) | True | LOC117599956 |
| TU372681 | lncRNA | upstream | 369655 | 4846192 ~ 4846717 (+) | True | G314636 |
| TU372673 | lncRNA | upstream | 415269 | 4800652 ~ 4801103 (+) | True | G314628 |
| TU372881 | lncRNA | downstream | 4058 | 5220646 ~ 5221823 (+) | True | G314800 |
| TU372889 | lncRNA | downstream | 106736 | 5323324 ~ 5323675 (+) | True | G314807 |
| TU372887 | lncRNA | downstream | 152046 | 5368634 ~ 5370815 (+) | False | si:dkeyp-97b10.3 |
| XR_004580301.1 | lncRNA | downstream | 157842 | 5374430 ~ 5383232 (+) | True | LOC117599958 |
| TU372915 | lncRNA | downstream | 158155 | 5374743 ~ 5374957 (+) | True | G314833 |
| XM_026941224.2 | mRNA | upstream | 18438 | 5196649 ~ 5197934 (+) | True | LOC113543161 |
| XM_026941223.2 | mRNA | upstream | 24973 | 5121697 ~ 5191399 (+) | True | ppm1lb |
| XM_026940921.2 | mRNA | upstream | 125099 | 5087839 ~ 5091273 (+) | True | sptssb |
| XM_026940920.2 | mRNA | upstream | 125099 | 5088400 ~ 5091273 (+) | False | sptssb |
| XM_026941161.2 | mRNA | upstream | 143233 | 5070618 ~ 5073139 (+) | True | LOC113543113 |
| XM_026940841.2 | mRNA | downstream | 5945 | 5222533 ~ 5226707 (+) | False | trim59 |
| XM_026940844.2 | mRNA | downstream | 6109 | 5222697 ~ 5226707 (+) | True | trim59 |
| XM_026941016.2 | mRNA | downstream | 32880 | 5249468 ~ 5322606 (+) | True | ift80 |
| XM_026941193.2 | mRNA | downstream | 124421 | 5341009 ~ 5370897 (+) | True | si:dkeyp-97b10.3 |
| XM_026941243.2 | mRNA | downstream | 499718 | 5716306 ~ 5723799 (+) | True | lxn |
| TU372849 | other | upstream | 125275 | 5088101 ~ 5091097 (+) | False | sptssb |
| TU372694 | other | upstream | 258252 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372695 | other | upstream | 258252 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372696 | other | upstream | 258252 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| XR_004580320.1 | other | upstream | 523556 | 4592440 ~ 4692816 (+) | False | LOC113543063 |
| trnat-agu_13 | other | downstream | 2957 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
| TU373444 | other | downstream | 677916 | 5894504 ~ 5896830 (+) | False | shox2 |
| TU373737 | other | downstream | 1010129 | 6226717 ~ 6227240 (+) | True | G315581 |
| XR_004580329.1 | other | downstream | 1720752 | 6937340 ~ 6944608 (+) | False | LOC113543138 |
| TU374286 | other | downstream | 1916871 | 7133459 ~ 7135501 (+) | True | G316001 |
