RNA id: XM_026941167.2


Basic Information

Item Value
RNA id XM_026941167.2
length 4010
RNA type mRNA
GC content 0.44
exon number 17
gene id kpna4
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5201021 ~ 5216591 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGACACAGCCCAAAGGCTTGACTGCACCCATACCACCGGCATTCCCATCATGCAACGCGAGGCTATTACTTgctagcagaaaaaaaaaatagtccgGTGGTTAGCTGAGCCAAAGTGAACGGGCTGTGTGAGAGGGATAGTCGAAAAGAATTTTCGGTATTTTCATCTAAATCGATTGCTATATATTCGCAAACATGAATGATAACGAGAAGTTGGACAACCAACGGCtgaaaaatttcaaaaataaaggtCGCGATTTGGAGACAATGAGGAGACAGCGCACAGAGGTGGTCGTGGAACTGAGAAAGAATAAGAGGGACGAGCACCTCTTGAAGAGGAGGAACGTGCCGCATGAGGACATCTGCGACGACTCTGATGTTGATGGAGATTTCAGGACGCAAAACACCTCTTTGGAGGCAATTGTCCAAAACGCCACCAGTGACAACCAGGGCATTCAGCTGAGTGCAGTGCAGGCTGCCAGGAAACTGCTATCAAGTGACCGCAACCCTCCCATAGATGATTTGATAAAATCTGGTATTCTGCCTATTCTTGTGCACTGCCTGGACAGAGATGACAATCCGTCTCTGCAGTTCGAGGCAGCCTGGGCTTTGACCAACATTGCTTCAGGGACCTCGGAGCAAACGCAGGCAGTGGTGCAGTCCAATGCAGTTCCCCTGTTCCTAAGGCTGCTGCACTCCCCCCACCAGAATGTGTGTGAGCAAGCTGTCTGGGCTTTGGGCAATATCATCGGTGATGGTCCTCAGTGCAGGGACTACGTGATCAGCCTCGGTGTTGTCAAGCCCCTGCTGTCCTTCATCAGCCCCTCCATCCCCATCACCTTCCTGCGCAATGTCACCTGGGTCATGGTTAACCTGTGCCGTCACAAGGATCCGCCTCCACCTATGGAGACTATCCAGGAGATCCTGCCTGCTCTGTGTGTCCTGATTCATCACACGGACGTCAATATCCTGGTGGACACAGTGTGGGCTCTGTCTTATTTGACTGACGCTGGCAATGAACAGATCCAGATGGTCATCGACTCTGGCATTGTTCCTCACTTGGTGCCCCTCCTTAGCCACCAGGAGGTCAAAGTTCAGACCGCAGCGCTGCGTGCAGTGGGGAACATTGTGACCGGCACAGACGAACAAACACAGGTGGTCCTGAACTGCGACGCCCTGAGCCACTTCCCTGCCTTGCTCACACACCCCAAGGAAAAAATCAACAAGGAGGCAGTGTGGTTCCTGTCCAATATCACAGCTGGGAACCAGCAGCAGGTCCAGGCAGTTATTGATGCCAGCCTGGTGCCCATGATCATCCTTCTGCTCGACAAGGGGGATTTTGGCACTCAGAAGGAGGCGGCTTGGGCCATCAGTAACCTCACAATCAGTGGCAGAAAAGACCAGGTTGCGTACCTGATCCAGCAGCAGGTTATTCCACCCTTCTGCAACCTGCTGACAGTCAAGGATGCTCAGGTGGTGCAGGTGGTTCTGGATGGACTGAGCAATATTCTCAAAATGGCTGATGAAGAGGCAGAGACCATCGCCAACCTGATTGAGGAGTGTGGAGGATTGGAAAAAATTGAACAGCTGCAGAATCATGAGAATGAGGACATCTACAAACTGGCTTACGAAATCATCGATCAGTTCTTCTCGTCTGACGATATTGATGAGGACTCGAGTCTGGTTCCAGAGGCCATCCAAGGTGGAACATATGGATTTAATTCATCAGCCAATGTGCCAGCAGAGGGATTCCAGTTCTAGAAGGGCGACATGAAATCTGGAGATTTGTTTGCGATGCAGCGCTctaacatgtaaaaaaaaaattaattaggagagaaagagagaagtgcGCGAATGTGAGAAATTAGATCCATTGTGCTTGGCTCATGGGATCCATGGCTGCATCTAATCCAAGAGAAATTGTGTGGATTTCGTTTGGCATCCTGGCGTGAATCCAGTCCAAATGAAGTTTGTGACGGCGAGTGGGTGCGAGTGAGAATGAGTGGGCTACTAAATGTTGCAAAAACACAACCATCTACACCGAATGCGTTCAGAGAACATTTCGCGAAATGTCACACAAATATCAGGACGTGTCTACCAAACGACAACAAAAGCAAATCGGCGCAAAAAACCACGGGGAGAAACAAGATGTCGCAACCTAGCAATTGGAGGGAATGACAcaagaaaacagacaaaaccTCTGAACaagaatatacaaaaaaaacaacaaaaaaatgaactgaGCAGCGGGAGGTGTCGTACCGGTTGGCGTCTCCCCTCCCCACAATGGGCCCCGCTGTGAGAGGTGTGTGCGAGTGAGCCGTTTTTGCGTATGAATGTATGGACCTGGGGCCGAGGACGCGGAGCTTACCTCCGAAATCTCTAACTTTCAGCGCGTGTCATTCCTCGACTGCGCTACGTGTGCAAAGTCAGCAGACGAATGGGTGTGTGCgagtgcgtgtgtatgtgtgagagcgagaaagagagtgtgCGTGTGACTGACTGGAGTGTGTGTCAAGCAGGGCTGAATGTGGACGCATGTGGAGAGTCACCATCGAAATACTGAAAGGAGCGTTAATACAAAGTAGTCTGGAAAatcaaataaaggaaaaaagaagtaaacagcAAAGAAGAAGCGGCTgatcagaaaaggaaaaaaaacaaaaacgtcaAGAATAAAAAATTGTCAAGCAACAGCaatgatttaaaattaaaaaaaaaaaaaaaaagacatcaggtttcttttctttttcttttatttcttaaatgaCACTGGACTAGGCTCTTAAGTGGAGAAATGGAGGGCCGTCGTGTTTAAAAATGATGCACTCTGTAGCTTTTGGGATTTGCTTTTAGTCTCcagtgttttacattttattttagcttcCGAATATATTTTCAGTGCTTGTGTAGAACTGCAGTTAACCCTTACAATCCCTCAATACAAGTACCACTGTAGTTTTGCCTTTTTGGAAAAGAAAGTTGCAATTACCCATTCTTACCTTTCAGTGCTCTGTATTACTCTTCTGCATGGtatatttgttcttttatttttcttctttgtagGTTCCCAGTAGAGCCCTCACACCTTCTTTGGTAATAAATGGAGAAATAAGGCCATTTTATGTAAAGTCACACAAATTTCATTCTTTACATGTACTGAAATGCAGCATAGTTTTATGGGTTTTTACTTCTGTTAACAAATtactttctccttttttttccctttttatttttgtaaactgCTTTTTATATTACGTCTCTCCCCCCATCCCCGTACTCAGCTCTCAGTACCCACCTGATCTGATTCAGTCTAACCtgttttgcacacacactgaggacagtgtgtgatgagtgcAGATTTAGGACTGACATGCCTGTCCCATCAAACTATATGcataatacaaatacaatattgattttttttttttgtttgttttatatgtatatgtagatAGTCCTAATTAATGTCAAGCCACAGTAGAGGTGTAATTCTTCATGATAGTTTCAatgatttgaaataaatgaCCTGCCTCTTATTTTGGGGTGTTGTTTTTGGGAGAAAATAATTTTCGTAGCGTGATGCTCCAGCTCCTTGACGTCTCTGGTGTCTCGCAGACTGTTGTCCGGTGCCTTCTTTCTAGAGCAcaagtaaaaggaaaaaaaaaattgcatgaacAAACCAGTGGTGTTCTCGAGTTCACAATATTGTCCTTACTCCTATTATACTattaggtcttttttttttctttttttttttttttttttttttttttttttttttttttttaaataaatattttgtttttgtgttgaaaTTTCACAACACTGTAGAGATGGATTACTCTTTGTGGTCACAACCTTCTGTTGGACATAGGGTATATGTGCAGCATTAGTAAAGAAGTGGTTTCAAAGGTGGGGAAAACATTGAAATTAGATGATATGCTTAACCTCTTGACCATATGACTACAGGTTAAGTTTCTTTgatgaaataaatattgaaaccata

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K23583 KPNA3_4; importin subunit alpha-4/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372866 lncRNA upstream 77619 5122698 ~ 5123402 (+) True G314785
TU372728 lncRNA upstream 222055 4978021 ~ 4978966 (+) True G314675
XR_004580298.1 lncRNA upstream 307743 4884210 ~ 4893278 (+) True LOC117599956
TU372681 lncRNA upstream 354304 4846192 ~ 4846717 (+) True G314636
TU372673 lncRNA upstream 399918 4800652 ~ 4801103 (+) True G314628
TU372881 lncRNA downstream 4055 5220646 ~ 5221823 (+) True G314800
TU372889 lncRNA downstream 106733 5323324 ~ 5323675 (+) True G314807
TU372887 lncRNA downstream 152043 5368634 ~ 5370815 (+) False si:dkeyp-97b10.3
XR_004580301.1 lncRNA downstream 157839 5374430 ~ 5383232 (+) True LOC117599958
TU372915 lncRNA downstream 158152 5374743 ~ 5374957 (+) True G314833
XM_026941224.2 mRNA upstream 3087 5196649 ~ 5197934 (+) True LOC113543161
XM_026941223.2 mRNA upstream 9622 5121697 ~ 5191399 (+) True ppm1lb
XM_026940921.2 mRNA upstream 109748 5087839 ~ 5091273 (+) True sptssb
XM_026940920.2 mRNA upstream 109748 5088400 ~ 5091273 (+) False sptssb
XM_026941161.2 mRNA upstream 127882 5070618 ~ 5073139 (+) True LOC113543113
XM_026940841.2 mRNA downstream 5942 5222533 ~ 5226707 (+) False trim59
XM_026940844.2 mRNA downstream 6106 5222697 ~ 5226707 (+) True trim59
XM_026941016.2 mRNA downstream 32877 5249468 ~ 5322606 (+) True ift80
XM_026941193.2 mRNA downstream 124418 5341009 ~ 5370897 (+) True si:dkeyp-97b10.3
XM_026941243.2 mRNA downstream 499715 5716306 ~ 5723799 (+) True lxn
TU372849 other upstream 109924 5088101 ~ 5091097 (+) False sptssb
TU372694 other upstream 242901 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other upstream 242901 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other upstream 242901 4937048 ~ 4958120 (+) False LOC113543089
XR_004580320.1 other upstream 508205 4592440 ~ 4692816 (+) False LOC113543063
trnat-agu_13 other downstream 2954 5219545 ~ 5219618 (+) True trnat-agu_13
TU373444 other downstream 677913 5894504 ~ 5896830 (+) False shox2
TU373737 other downstream 1010126 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 1720749 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 1916868 7133459 ~ 7135501 (+) True G316001

Expression Profile