Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU373444 |
| length | 841 |
| RNA type | TUCP |
| GC content | 0.55 |
| exon number | 2 |
| gene id | shox2 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 5894504 ~ 5901566 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004580354.1 | lncRNA | upstream | 152150 | 5741742 ~ 5742354 (+) | True | LOC117599998 |
| TU373059 | lncRNA | upstream | 282741 | 5611559 ~ 5611763 (+) | True | G314969 |
| TU373044 | lncRNA | upstream | 306585 | 5587702 ~ 5587919 (+) | True | G314954 |
| TU373013 | lncRNA | upstream | 346312 | 5547889 ~ 5548192 (+) | True | G314923 |
| TU373005 | lncRNA | upstream | 360519 | 5533766 ~ 5533985 (+) | True | G314915 |
| TU373443 | lncRNA | downstream | 3800 | 5900630 ~ 5901566 (+) | False | shox2 |
| TU373594 | lncRNA | downstream | 280624 | 6177454 ~ 6178053 (+) | True | G315454 |
| TU373735 | lncRNA | downstream | 327929 | 6224759 ~ 6225767 (+) | True | G315579 |
| TU373736 | lncRNA | downstream | 329141 | 6225971 ~ 6226670 (+) | True | G315580 |
| TU373740 | lncRNA | downstream | 333746 | 6230576 ~ 6231579 (+) | True | G315584 |
| XM_026941314.2 | mRNA | upstream | 111270 | 5782293 ~ 5783234 (+) | True | LOC113543227 |
| XM_026941243.2 | mRNA | upstream | 170705 | 5716306 ~ 5723799 (+) | True | lxn |
| XM_026941193.2 | mRNA | upstream | 523607 | 5341009 ~ 5370897 (+) | True | si:dkeyp-97b10.3 |
| XM_026941016.2 | mRNA | upstream | 571898 | 5249468 ~ 5322606 (+) | True | ift80 |
| XM_026940841.2 | mRNA | upstream | 667797 | 5222533 ~ 5226707 (+) | False | trim59 |
| XM_034314696.1 | mRNA | downstream | 98659 | 5995489 ~ 6096462 (+) | False | dock10 |
| XM_034314699.1 | mRNA | downstream | 98659 | 5995489 ~ 6096462 (+) | False | dock10 |
| XM_034314697.1 | mRNA | downstream | 98659 | 5995489 ~ 6096462 (+) | False | dock10 |
| XM_026940985.2 | mRNA | downstream | 136193 | 6033023 ~ 6096462 (+) | False | dock10 |
| XM_026940986.2 | mRNA | downstream | 136193 | 6033023 ~ 6096462 (+) | False | dock10 |
| trnat-agu_13 | other | upstream | 674886 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
| TU372849 | other | upstream | 803407 | 5088101 ~ 5091097 (+) | False | sptssb |
| TU372694 | other | upstream | 936384 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372695 | other | upstream | 936384 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372696 | other | upstream | 936384 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU373737 | other | downstream | 329887 | 6226717 ~ 6227240 (+) | True | G315581 |
| XR_004580329.1 | other | downstream | 1040510 | 6937340 ~ 6944608 (+) | False | LOC113543138 |
| TU374286 | other | downstream | 1236629 | 7133459 ~ 7135501 (+) | True | G316001 |
| TU374748 | other | downstream | 1798704 | 7695534 ~ 7695919 (+) | True | G316413 |
| TU375134 | other | downstream | 2366509 | 8263339 ~ 8264061 (+) | True | G316744 |
