RNA id: XM_026941320.2


Basic Information

Item Value
RNA id XM_026941320.2
length 2403
RNA type mRNA
GC content 0.48
exon number 5
gene id shox2
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5894504 ~ 5901566 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTAACTCCCCGCGCCGAGACCCGGAACCGGCCCGCATCTACGAGCTGCCGAGCAGAGCGCGAGCTCCGAGAGTTGGCAACCCGCATCAGCacgagagaagaaaaaaaaaaaaaaaaaaaaaaaacagagagtgagagaataagCAGCATTGATGTCTTATCTGAGACTGCTGAGAAACTGAGCttgagaaagtgagtgagaagagaagagaagagtagagaaaagagaagagaagactgGCGggctttatttttccttcttcttcttgggACCAGTGATGGAAGAACTCACCGCTTTCGTGTCCAAATCCTTTGAtcagaaagtgaaagagaagaaagaggcgATCACGTACCGGGAGGTGCTGGAGACGGGCTCGGCGCGAGCCAGGGAAGCGCTCCCGGTTGAAGCAGGGCGCGAGGACGCGAGCATTCTAGCGCGAGGAGCCGTCGCGCGCTCACCGGTCAGAGAAGCGGACATGACGGGGCCGGAGAGGACGAGGGACACGGGGAGTCCCAAACTCACAGACGGCATCCTGGACGTGAAGGAGCGAAAAGAGGATGCCAAGCCGACAGAGGATGAGACTCAGACCAAAATCAAGCAGAGGAGAAGTCGGACTAACTTTACTCTGGAGCAGCTGAATGAGCTGGAGAGGCTGTTCGACGAGACGCACTATCCGGACGCGTTCATGCGCGAGGAGCTGAGTCAGCGGCTCGGGCTCTCCGAAGCGCGCGTGCAGGTTTGGTTTCAAAACAGGAGAGCcaaatgcagaaaacaggaaaaccaGTTACACAAAGGGGTGCTCATCGGAGCTGCGAGTCAGTTTGAAGCGTGCCGCGTCGCGCCATATGTCAACGTGGGAGCTTTGCGCATGCCATTCCAACAGGATAGTCATTGCAACGTGCCACCCTTCTCCTTTCAGGTGCAGGCGCAGCTGCAGCTGGACAGCGCCGTGGCCCACGCGCACCATCACCTGCACTCTCACCTGGCGGCGCACGCGCCCTACATGATGTTCCCCGCGCCGCCGTTCGGCTTGCCCTTGGCCACGCTGGCGGCGGAGTCTGCCTCGGCGGCGTCGGTGGTGGCCGCAGCCGCCGCCGCCAAAAACAGCAACAAGAACTCGAGCATCGCGGATCTGAGACTGAAGGCCAAGAAGCACGCGGCGGCGCTCGGACTGTGACACGCCGGTGCGCGCGCGCGCGGGCGGGCACAGTGCACACTCACAACACTAGGACGTTATTTATACTCTCTTATGAAGGACACTCCAGAATAAAGGCTTATTTATGACATGAACAACACAAACTGTGAAATCGAAGTGAAGCCTGTCACGGATGCAGGTTGCAACCAGGACGAACCGGAAGCGGAAACCATTTGTCCAAGACAAAACTCATTCCGAATGTGTGCAAACGCAGCTGGGACGTTGGACTCCTGTGTGACAAAGTGAACACTTTCTGCGTagtttgctgttttaaaaaaaaaaaaacaagaaatagttaaaaaaaaagaggctggccTCGTTTTATCTGAAACAGAGTTTCTCATGAAAAGGACGCTTATGGATGTCTGTGCGCGAGGacttataacaaaaaaaacaacaacaacaacaaaaacacattaaatcttTCTTCTAACGTGCCATCACGTGAGCTCGGTGTCGCAGGGTGGCGTGACGTCACGCCACGCCCTCACGTCAAATCAGATGGTGAACTTGGACACCTTGAGCGCGCgcctgaatgattttttttgggggggttcTCGAGCCAGTGGACGTTTGggaaaacctaaaaaaaaaaaaaaagaaaaagaaagaaagaaaaactatcacacattttaaacacattttacttattattattattattattattattattattattattattattgagtgtATGGTGAATTTCCTCACATATCAGGTCTTTATCCAATACAGAGTGTCCACTTCCTGCAGCTTACACTGAGGTCCCAGTATTAATGTACAGAATCAGATACATCTTTATCCTACTGAGAGCATTAAAGTCACCGCTGCGGTACTCAACGTGTACAATATGTCCAAATGGACagatattttggttattttgtGCTTCATGAAGACATTGTGGGAACCCTTTTTgggctgttgttttttttttattctgattatttttatttttttgcattcacaCCGTGTTTAAAGTCATGTGGATCTCTAtgtaatgttggtgtttttttataAAGTGAACGTACCTCGACTGCAGGCTCGGATCTCCTGGAATATCCCTGAAATaccttttaacattttctttttaaaaacaaacaaacaaacaaaccaacaaacaaacaaaaaaacaaattataattTCATCATTACTGTGAAACGTGAACTCACCTGACCACAGTGTTTTCAATTCATAATAAATC

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09331 SHOX; short stature homeobox protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580354.1 lncRNA upstream 152154 5741742 ~ 5742354 (+) True LOC117599998
TU373059 lncRNA upstream 282745 5611559 ~ 5611763 (+) True G314969
TU373044 lncRNA upstream 306589 5587702 ~ 5587919 (+) True G314954
TU373013 lncRNA upstream 346316 5547889 ~ 5548192 (+) True G314923
TU373005 lncRNA upstream 360523 5533766 ~ 5533985 (+) True G314915
TU373594 lncRNA downstream 275889 6177454 ~ 6178053 (+) True G315454
TU373735 lncRNA downstream 323194 6224759 ~ 6225767 (+) True G315579
TU373736 lncRNA downstream 324406 6225971 ~ 6226670 (+) True G315580
TU373740 lncRNA downstream 329011 6230576 ~ 6231579 (+) True G315584
TU373739 lncRNA downstream 331036 6232601 ~ 6234263 (+) True G315583
XM_026941314.2 mRNA upstream 111274 5782293 ~ 5783234 (+) True LOC113543227
XM_026941243.2 mRNA upstream 170709 5716306 ~ 5723799 (+) True lxn
XM_026941193.2 mRNA upstream 523611 5341009 ~ 5370897 (+) True si:dkeyp-97b10.3
XM_026941016.2 mRNA upstream 571902 5249468 ~ 5322606 (+) True ift80
XM_026940841.2 mRNA upstream 667801 5222533 ~ 5226707 (+) False trim59
XM_034314696.1 mRNA downstream 93924 5995489 ~ 6096462 (+) False dock10
XM_034314699.1 mRNA downstream 93924 5995489 ~ 6096462 (+) False dock10
XM_034314697.1 mRNA downstream 93924 5995489 ~ 6096462 (+) False dock10
XM_026940985.2 mRNA downstream 131458 6033023 ~ 6096462 (+) False dock10
XM_026940986.2 mRNA downstream 131458 6033023 ~ 6096462 (+) False dock10
trnat-agu_13 other upstream 674890 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 803411 5088101 ~ 5091097 (+) False sptssb
TU372694 other upstream 936388 4937048 ~ 4958120 (+) False LOC113543089
TU373737 other downstream 325152 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 1035775 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 1231894 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 1793969 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 2361774 8263339 ~ 8264061 (+) True G316744

Expression Profile