RNA id: TU373737


Basic Information

Item Value
RNA id TU373737
length 524
RNA type TUCP
GC content 0.58
exon number 1
gene id G315581
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6226717 ~ 6227240 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAACAAGAATCCCGCTGTCACCCAGCCCACATATATGGCAGcacccatctctctcttcaGCGCCTCATGCACTACAGGGTTATGGAAGTCCCTGATGATGGTGTCAGCCGTCCAGGAAACGGGAATTGCGGCACCAAGTCCCGAGAGCATGAAAGTGACCCCCGACGCCACCACGATCCTAGCCTTGGCCCATGGATTGCTGAGACAGTTGGTGCACTCGGCTCCTAGCAGGAAGATGAGGAACCCGAGACATGCAAGTGCCATAGTGGTGACCACGAGGCCACGCGAGGCCTGCAGTGTTGGGTCCAGGTCTAGCAGAGCATCGTACAGCTTGCACTGCATCTGGCCCGTGCGCTCGTACACACAGGTCATCCACAGGCCCTCCCAGAAGACCTGCGCCACCACGATGTTAGTGCCCACAAACGCTGTCACCTTCCACATGGGCAGGGCGCAGATGATGATGGTGCCTGCCAGGCCAATCATAGACAGCGTGATGCCCAGCACCTGCAGAGCCATATGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373736 lncRNA upstream 47 6225971 ~ 6226670 (+) True G315580
TU373735 lncRNA upstream 950 6224759 ~ 6225767 (+) True G315579
TU373594 lncRNA upstream 48664 6177454 ~ 6178053 (+) True G315454
TU373443 lncRNA upstream 325151 5900630 ~ 5901566 (+) False shox2
XR_004580354.1 lncRNA upstream 484363 5741742 ~ 5742354 (+) True LOC117599998
TU373740 lncRNA downstream 3336 6230576 ~ 6231579 (+) True G315584
TU373739 lncRNA downstream 5361 6232601 ~ 6234263 (+) True G315583
TU373749 lncRNA downstream 24194 6251434 ~ 6252669 (+) True G315591
TU373750 lncRNA downstream 24194 6251434 ~ 6252622 (+) False G315591
TU373748 lncRNA downstream 24231 6251471 ~ 6252622 (+) False G315591
XM_026941443.2 mRNA upstream 2303 6217438 ~ 6224414 (+) True sbds
XM_026940946.2 mRNA upstream 79627 6140585 ~ 6147090 (+) True LOC113543022
XM_026941237.2 mRNA upstream 88316 6124611 ~ 6138401 (+) True cul3b
XM_026941484.2 mRNA upstream 118348 6106002 ~ 6108369 (+) True LOC113543361
XM_034314696.1 mRNA upstream 130255 5995489 ~ 6096462 (+) False dock10
XM_026940835.2 mRNA downstream 36388 6263628 ~ 6266410 (+) True LOC113542971
XM_026941336.2 mRNA downstream 39253 6266493 ~ 6267874 (+) True LOC113543241
XM_034314542.1 mRNA downstream 47499 6274739 ~ 6276110 (+) True LOC113543329
XM_026941079.2 mRNA downstream 156770 6384010 ~ 6399285 (+) True LOC113543080
XM_034314660.1 mRNA downstream 156785 6384025 ~ 6399285 (+) False LOC113543080
TU373444 other upstream 329887 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1007099 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1135620 5088101 ~ 5091097 (+) False sptssb
TU372694 other upstream 1268597 4937048 ~ 4958120 (+) False LOC113543089
XR_004580329.1 other downstream 710100 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 906219 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 1468294 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 2036099 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 2041469 8268709 ~ 8269198 (+) True G316745

Expression Profile