RNA id: TU373751



Basic Information


Item Value
RNA id TU373751
length 1199
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G315591
representative False

Chromosome Information


Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6251434 ~ 6252669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


tgttttgtaacagtggaaaaaaagaaaaacacatagaaTGCACCATAGCATCAGCTCTTAAGATATAGAAAGTAACTGAAATGTAAAACATGTAAACCATAAAATGTAGAATTTAAATGCTATAcatgtgtattatataatacaggtcaaatataaaatgatatcgAATCTAAATCAGAGCACAACAGTATATTAAAGCTcttggttattaaaaaaaaacaacaaaaacaatccaacaaacaaaaaaatcccaaaagGGCAACACCCAACTTTGACAGACAGTGCTGTTTGTCATGACATTGCTTGTTCTGCTACAGCTTGTAATGTTAAATCGTTGTACTGTCATGACTTTGGTGAGCAGCTAATAATACAAAGACAATGAAATATGCACCATCTATATCAGCTGGCCAAAATACAGCAACATCATGAAGATCAAGTCCAGAGTTGAAGCTTCTTTTGAAAGGATCACACGTAGCCTTTGGATCCTGATGATTTGGGTGCTGAATACTTTGCAGTGTAGTTGTCTTTGGGTGGACAGTTGCAGCAGAGCAAGCCTCCCCCGATGAGCAACAGAGCAGCGGCGGCCCAGCCGATGTACAGAGAAGCTCCGATCTCATATTTCTGTGCACTAGGTACTAAGGGGTTGTAGAAGTCCCTGATAATGGTGTTGGCCGTCCAGCAGACGGGAATCAGACACAGGAGACCAGAGACGATGAAGGCCACGCCGGCCGCGATGCCCACCTTTGCTTTGGAGCTCTCGTCTTCCACACAGTTGGTGCACTTGCCACCGGCGATGGCCAGGAGGATCCCGATGACACCAACCAAAATGGAAATGACGCAGAGTGCGCGGGCGGCCTGTAGGTCCGAGCTGAGAGCCAGCATAGAGTCATAGACCTTGCACTGCATCTGCCCGGTGCTTTGCACCACGCAGGCCATCCAGATGCCTTCCCAGGAGATCTGCGCCGTCACAATGTTGTTCCCAATGAAAGCTGTGACCTTCCACATGGGCAGGGCGCAAATCACGATGGTCATGATCCAGCCAATGATGGCCAGGGCCGTGCCCAACATCTGTAGCCCGGCAGATACCATgcttcctctgttttttttgtgtcttagTCCAAACAAAAAGCAGTCCAAATATATGTGTAGTCTCTTCCCAAATGCAGTGACAAAGACAATGGGTGAGAGTGGGTCCTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU373739 lncRNA upstream 17208 6232601 ~ 6234263 (+) True G315583
TU373740 lncRNA upstream 19892 6230576 ~ 6231579 (+) True G315584
TU373736 lncRNA upstream 24801 6225971 ~ 6226670 (+) True G315580
TU373735 lncRNA upstream 25704 6224759 ~ 6225767 (+) True G315579
TU373594 lncRNA upstream 73418 6177454 ~ 6178053 (+) True G315454
TU373835 lncRNA downstream 147071 6399740 ~ 6399979 (+) True G315647
TU373836 lncRNA downstream 150733 6403402 ~ 6403601 (+) True G315648
TU373838 lncRNA downstream 153453 6406122 ~ 6407755 (+) True G315650
TU373863 lncRNA downstream 223020 6475689 ~ 6475893 (+) True G315665
TU373858 lncRNA downstream 253271 6505940 ~ 6506686 (+) True G315660
XM_026941443.2 mRNA upstream 27057 6217438 ~ 6224414 (+) True sbds
XM_026940946.2 mRNA upstream 104381 6140585 ~ 6147090 (+) True LOC113543022
XM_026941237.2 mRNA upstream 113070 6124611 ~ 6138401 (+) True cul3b
XM_026941484.2 mRNA upstream 143102 6106002 ~ 6108369 (+) True LOC113543361
XM_026940984.2 mRNA upstream 155009 6042800 ~ 6096462 (+) False dock10
XM_026940835.2 mRNA downstream 10959 6263628 ~ 6266410 (+) True LOC113542971
XM_026941336.2 mRNA downstream 13824 6266493 ~ 6267874 (+) True LOC113543241
XM_034314542.1 mRNA downstream 22070 6274739 ~ 6276110 (+) True LOC113543329
XM_026941079.2 mRNA downstream 131341 6384010 ~ 6399285 (+) True LOC113543080
XM_034314660.1 mRNA downstream 131356 6384025 ~ 6399285 (+) False LOC113543080
TU373737 other upstream 24231 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 354641 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1031853 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1160374 5088101 ~ 5091097 (+) False sptssb
TU372696 other upstream 1293351 4937048 ~ 4958120 (+) False LOC113543089
XR_004580329.1 other downstream 684671 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 880790 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 1442865 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 2010670 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 2016040 8268709 ~ 8269198 (+) True G316745

Expression Profile