RNA id: TU373836


Basic Information

Item Value
RNA id TU373836
length 200
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G315648
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6403402 ~ 6403601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacgtttcagacaaaaaaacataatgaaggctgctgggttttgctgcaaaaataagaagcgagtgtgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttacagctcatttccttataaaactgcactaattctacctgagactactattttttttttaaaagcgaaggatcgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373835 lncRNA upstream 3423 6399740 ~ 6399979 (+) True G315647
TU373749 lncRNA upstream 150733 6251434 ~ 6252669 (+) True G315591
TU373751 lncRNA upstream 150733 6251471 ~ 6252669 (+) False G315591
TU373750 lncRNA upstream 150780 6251434 ~ 6252622 (+) False G315591
TU373748 lncRNA upstream 150780 6251471 ~ 6252622 (+) False G315591
TU373838 lncRNA downstream 2521 6406122 ~ 6407755 (+) True G315650
TU373863 lncRNA downstream 72088 6475689 ~ 6475893 (+) True G315665
TU373858 lncRNA downstream 102339 6505940 ~ 6506686 (+) True G315660
TU374042 lncRNA downstream 242544 6646145 ~ 6654063 (+) True G315811
TU374111 lncRNA downstream 322873 6726474 ~ 6726688 (+) True G315862
XM_034314660.1 mRNA upstream 4117 6384025 ~ 6399285 (+) False LOC113543080
XM_026941090.2 mRNA downstream 30665 6434266 ~ 6470111 (+) True LOC113543083
XM_026941279.2 mRNA downstream 492645 6896246 ~ 6904082 (+) True LOC113543204
XM_034314796.1 mRNA downstream 533739 6937340 ~ 6942819 (+) False LOC113543138
XM_034314797.1 mRNA downstream 533741 6937342 ~ 6942819 (+) True LOC113543138
XM_026941194.2 mRNA downstream 533742 6937343 ~ 6944990 (+) False LOC113543138
TU373737 other upstream 176162 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 506572 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1183784 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1312305 5088101 ~ 5091097 (+) False sptssb
TU372696 other upstream 1445282 4937048 ~ 4958120 (+) False LOC113543089
XR_004580329.1 other downstream 533739 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 729858 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 1291933 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1859738 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1865108 8268709 ~ 8269198 (+) True G316745

Expression Profile