RNA id: TU374285


Basic Information

Item Value
RNA id TU374285
length 1986
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G316000
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7127691 ~ 7129877 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAAGATGTTTAATCTGTAAGGGCAATGTACTATATTAAGATACAGTCACAGCCTTGCATTATTCTCCCAATCATGATGACTAGCATTTTGCCTTGTGAATATTAGACTAATAAAGcttccaaaatggcaaataattTACAATCTCAGTCGAATTTGGACAATTTTTGACCTTCTACCACCAGAGAGGCACAAAATGGGCACTGCTTATGTGTGTACAGATtagtaaacaaagaaaaagggaGTTCTGAATACAATAGAAACTGAAATTTGtgaacattataataataataaaaaaactgccCCTTGCACTTACGGCTTACATTATTCAAGAATCCTTTAGAATGAGTGTTTCTCTCTGGTCAGGACCAATATTGAGTTAGGAAGGCTGTTTTGGCCCTTAACCAGCCCCAGTAAAGGCATAAACGCagcattattaaagaaaaaatccaccctgagcAACCTTCACAGTCATCTTTATAATCatcatgtgatcttcagtggcatccaacatttattttgtaatgaaattctgagttgcgttttttttttttttaaatatcttccataaacattttggtctattttcactttggtttcctccattacccacaatgccatctGACTACCTGTACCAATGGGAATTAACCCTCGCtgcatctctacctaaagaggtAGAGTCTTATAGAGTCTTCAGTATGTCccgctctctcacctcctcatctggacactctgctcaaacaggtCAGCTTCCAAAACTTCAGCTTTCATGCGTGAACAAGCATGAACGCGATTGTGCTCATCATCCCATTGATCGCTAGCTAACTCGGCACAACtgcatcatatagctgcattcCATTCTACAGGGTgttccaaaagtctccatacgtaAGGGAAATGaatactttttagcaaaatgtcttccataatttttcatacttatatTATAtctttttcagatagcctttaacaACAGAAGaaggtattgaaatcattctcatggctggatcaggaagctgtcgcaaaattgtgatggactttaacaggaaacatggcaagcacatatcacacacacacacacacacacacacacacacacacacacacacaccactgctcCTAAACTtaataacaaattcaaaaagactggaagtgttgtggaccaaccgagaagtggacgtccacgaatatccactgatgaaggcacaaacAACATGGTGCTGGTGTACATAGTCCCatgtgtatggagacttctgggacacgctgtagaactttgagtccaacgcTTGTTGTCTCCATTAcgtctacactggatttctcattaacacGACATCGAATGTCAATATGGCGAGTGAGAAAggttttaggagctaacagcaaaacctgatcgttattgcttacatttaaaattggttaatttttttctccGATTAAAAACCATTGTAATTGAACTAGCAATGTCACCCTGTGATGTCAGAGCGGGAGACAACGCTAAGCTTTCACAGCACAGTATTAATACAGCACAAACTACCACAtaagcaccagaatcactaaccccaatcataaatatttcaatataaacatagtGACGTGTTTAAGGTGGAGTTTTCACAGCTGGTGCTTGTAGAATTTGTGAAAAGCAGAACTGGGGGATTTAAACCTTTCCTTTAGAGTACATTTCCACAACATTGCGCTTCAGAAATATCACGGTCGATTTTTAAATTCTGGGAACCTGGGAGGAATGAGACCTCTCACTGATCAGTTCATGCTGAAGGTTCTGTCATCACACTGGGGGGCGTTTATGTGATCAGACAAGCCCGCATTGCAGGTTAACCAGACAGCATCTGCCAGCACTGAGCGACACGACTGGACGACTCCAGCAGCGATAATAACACAATGCAACCGGGTCGGCAATCACTGGATTTCTCTGAAAGCCCTCTTTTCTACATATTTCACCTTGTGTTTCCTCTtgaacctgcaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374244 lncRNA upstream 93885 7033565 ~ 7033806 (+) True G315968
TU374158 lncRNA upstream 192514 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 212150 6914261 ~ 6915541 (+) True G315894
TU374135 lncRNA upstream 233074 6894337 ~ 6894617 (+) True G315886
TU374111 lncRNA upstream 401003 6726474 ~ 6726688 (+) True G315862
TU374593 lncRNA downstream 296584 7426461 ~ 7433424 (+) True G316288
TU374628 lncRNA downstream 375202 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 435209 7565086 ~ 7568068 (+) True G316339
TU374659 lncRNA downstream 435209 7565086 ~ 7568068 (+) False G316339
TU374677 lncRNA downstream 452455 7582332 ~ 7590920 (+) False crsp7
XM_026940849.2 mRNA upstream 118953 6997484 ~ 7008738 (+) True meis3
XM_026941503.2 mRNA upstream 145045 6971552 ~ 6982646 (+) True LOC113543373
XM_026941532.2 mRNA upstream 157743 6961944 ~ 6969948 (+) True ech1
XM_034314805.1 mRNA downstream 15524 7145401 ~ 7156229 (+) False atm
XM_034314802.1 mRNA downstream 15526 7145403 ~ 7203200 (+) True atm
XM_034314803.1 mRNA downstream 25833 7155710 ~ 7203200 (+) False atm
XM_034297691.1 mRNA downstream 129395 7259272 ~ 7355018 (+) False dscamb
XM_026941410.2 mRNA downstream 129409 7259286 ~ 7394464 (+) True dscamb
XR_004580329.1 other upstream 183083 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 900451 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1230861 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1908073 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 2036594 5088101 ~ 5091097 (+) False sptssb
TU374286 other downstream 3582 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 565657 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1133462 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1138832 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1682080 8811957 ~ 8812820 (+) False LOC117599964

Expression Profile