Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU374659 |
| length | 625 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | G316339 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 7565086 ~ 7568068 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU374628 | lncRNA | upstream | 59682 | 7505079 ~ 7505404 (+) | True | G316317 |
| TU374593 | lncRNA | upstream | 131662 | 7426461 ~ 7433424 (+) | True | G316288 |
| TU374285 | lncRNA | upstream | 435209 | 7127691 ~ 7129877 (+) | True | G316000 |
| TU374244 | lncRNA | upstream | 531280 | 7033565 ~ 7033806 (+) | True | G315968 |
| TU374158 | lncRNA | upstream | 629909 | 6934949 ~ 6935177 (+) | True | G315901 |
| TU374677 | lncRNA | downstream | 14264 | 7582332 ~ 7590920 (+) | False | crsp7 |
| XR_004580345.1 | lncRNA | downstream | 80636 | 7648704 ~ 7650020 (+) | True | LOC117599993 |
| TU374729 | lncRNA | downstream | 102263 | 7670331 ~ 7670559 (+) | True | G316396 |
| TU374730 | lncRNA | downstream | 103222 | 7671290 ~ 7671520 (+) | True | G316397 |
| TU374731 | lncRNA | downstream | 103504 | 7671572 ~ 7671859 (+) | True | G316398 |
| XM_026941284.2 | mRNA | upstream | 10161 | 7553561 ~ 7554925 (+) | True | foxl2a |
| XM_026940815.2 | mRNA | upstream | 60389 | 7500421 ~ 7504697 (+) | True | rbp2a |
| XM_034297702.1 | mRNA | upstream | 71267 | 7489370 ~ 7493819 (+) | True | LOC117595729 |
| XM_034314654.1 | mRNA | upstream | 75085 | 7470285 ~ 7490001 (+) | False | brwd1 |
| XM_034314652.1 | mRNA | upstream | 75126 | 7467350 ~ 7489960 (+) | False | brwd1 |
| XM_026941351.2 | mRNA | downstream | 53 | 7568121 ~ 7575380 (+) | False | LOC113543252 |
| XM_026941352.2 | mRNA | downstream | 398 | 7568466 ~ 7575380 (+) | True | LOC113543252 |
| XM_026941350.2 | mRNA | downstream | 4829 | 7572897 ~ 7575380 (+) | False | LOC113543252 |
| XM_026941261.2 | mRNA | downstream | 14245 | 7582313 ~ 7598164 (+) | True | crsp7 |
| XM_026941265.2 | mRNA | downstream | 35293 | 7603361 ~ 7612784 (+) | True | trnau1apb |
| TU374286 | other | upstream | 429585 | 7133459 ~ 7135501 (+) | True | G316001 |
| XR_004580329.1 | other | upstream | 620478 | 6937340 ~ 6944608 (+) | False | LOC113543138 |
| TU373737 | other | upstream | 1337846 | 6226717 ~ 6227240 (+) | True | G315581 |
| TU373444 | other | upstream | 1668256 | 5894504 ~ 5896830 (+) | False | shox2 |
| trnat-agu_13 | other | upstream | 2345468 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
| TU374748 | other | downstream | 127466 | 7695534 ~ 7695919 (+) | True | G316413 |
| TU375134 | other | downstream | 695271 | 8263339 ~ 8264061 (+) | True | G316744 |
| TU375135 | other | downstream | 700641 | 8268709 ~ 8269198 (+) | True | G316745 |
| TU375607 | other | downstream | 1243889 | 8811957 ~ 8812820 (+) | False | LOC117599964 |
| TU375892 | other | downstream | 1844255 | 9412323 ~ 9415164 (+) | True | G317390 |
