RNA id: XM_026941267.2


Basic Information

Item Value
RNA id XM_026941267.2
length 2021
RNA type mRNA
GC content 0.41
exon number 2
gene id fitm1
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7751694 ~ 7756961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGGGTAGTGGTGCAGAGATTGGAAGGGAACCCTCCAGATACACGCATAACACAAAAGACAGTAACAAGCTAGGCATGGACACATATTGAAGATTAGAGAACAAacttcagaagaagaaaacaacGTGCTGGATCAATCTTGAGAATATATTTGGACTACGCTTGGAAGCTGAAGGTTTTTTTAACAGGACACTGGGGGTAAGGCTGTTCTGAGGCAGACAATAAGTGCTTCAAATGTTTCTGAACTCTTTACTTGTGGTCATAACTGACCTTGCGGCTGCACTGCTAGGAAATGTATTATTTCGCCGCCATTTCCATTTGTTTCTGTCAGCCATGGTCATGTTTGGACCCTTGCTGAACTTATGGGTATCCCACTATAGTGTTTTTGCGAAGAGGAGCCATTATCTTTACAGAGTTTTTCTGCGTTCAGGCTGGGGTTGGACCTGTATCTTTGTAGGCTCTTTCGTCTTCCTCCTGTCTTTATCTGTGCGGCGCTCCTTAACACTCACACTGCGGCATCTCTCACGGCTGGCTGTAGCAGGCGGGCTGTGGCTGGGCTTCCGGAAGCTGCTTAGCCTGCTGGAGAATGCCACAGGGAGTTGTTACGAGCCCCTGAGTGGAGCTCATGAGCTTGCTGTAGGGGCTAATGAAGCAGGGCAGCCTTTATTGCTGTTACGGGAGGGTGAGACAAAGGCTGTTTGCATCAGCTCTGGCATGGTATGGCGGGGGTACGAGGTCTCTGAGGACAtctttctgctttctttttgtTGCCTGCTGCTGGCTGAGGAGATGGCTGTGTTTGGGCCCTATCTGAACCTGGGTGGGATCTCTGGAGCACCCCTGCGCATCCTGTTCTTATTCTGTGTCCTGTTGCTGAGTCTCTGGTTATTTCTACTTTTCTGCCTACTCGCTTATTTTCCTCAATTCCCAAATCAGCTCTTGGGAGGAGCTCTAGGTTGCCTGAGCTGGAGGGCAACGTACCAGGGCTGGTACCATATGGGACCAAGCTGGTACTGCCCTGGAAGGCCTGGGGTGGGTCTTCTGACAACATAGggacaaataaaattataaaaaaactaaaaaataataaatttaattactttGGGGTAAATATGTTTGAggaattatttaataaagtttaatttgCACAGTTTTGAACTACCTCTGTTTTTGtgagatttaattttaaaaagtagtcAAAAGTAGTCAACAGTCACTGACAAGTTTTCTTCATTTACCTTTGTCAGTGTGGTGACATattcccaaaaataaaaattaaggcTAAAAGAACTTGTTGAAAAATAGATGTGATAGATATTAGGacttctattgtttttttttttttttaagagtaatTAAGTAAGGGGGGTTCAGTCTTTGTGACTTCAGCAGAGTTGAAGTTAGCAGATTATTGAAATTATCTGTGTACGGTTCATTCCTCCGAAGTTGCCGACAAGCACTAAGTCTGAATCCCCCAAAACATGGGAGATGTAAAATGTAGACATTGGAGTATAAAGGCAAGAGCCAATTTTACAAAGTCTACCTACATCACAAAGTTGAAGATACCGTACAAATGAGATGAAAGaacatattcaaataaaaacagttaGAATTTACACAGTTATGAAAAGTCCTAGTAGTGATATGTTAATTTTCCACAAATATGATGCtataaattagcactttgtttaatgtttaacacAATTAAGTGCTCACTATCAACATTTGCAATGAGTATGCAGTATTTGCATGTTTCTGGCTACTGCTTTGTGTGCTCGAATCACAGCGCTCTGTTAAAGATATTATTTAAACTCAAAAGCATGAAACCTTAGAAGTAAAAACTATGATGCAGCAGGAGCATGGGAGAGATTCTTACCATTATTtcataattaagtaattaagtaagttTTACGTATATATTTAACACTGCCttcaaatggcattccatagttttGGGTGATTGGTATGCCTGTCTGAGAAAAGTatcctgaaaaataaacagtttgtaTAGTCAGCAAAA

Function

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374758 lncRNA upstream 21957 7703722 ~ 7729737 (+) False G316419
TU374761 lncRNA upstream 21957 7703722 ~ 7729737 (+) False G316419
TU374760 lncRNA upstream 24592 7706377 ~ 7727102 (+) False G316419
TU374756 lncRNA upstream 42388 7703722 ~ 7709306 (+) False G316419
TU374764 lncRNA upstream 42388 7703722 ~ 7709306 (+) True G316419
TU375004 lncRNA downstream 287532 8044493 ~ 8044697 (+) True G316630
TU375122 lncRNA downstream 501868 8258829 ~ 8259070 (+) True G316741
TU375123 lncRNA downstream 502297 8259258 ~ 8261708 (+) False LOC113543009
TU375124 lncRNA downstream 502297 8259258 ~ 8261631 (+) False LOC113543009
TU375125 lncRNA downstream 502297 8259258 ~ 8261708 (+) False LOC113543009
XM_026941265.2 mRNA upstream 138910 7603361 ~ 7612784 (+) True trnau1apb
XM_026941261.2 mRNA upstream 153530 7582313 ~ 7598164 (+) True crsp7
XM_026941351.2 mRNA upstream 176314 7568121 ~ 7575380 (+) False LOC113543252
XM_026941352.2 mRNA upstream 176314 7568466 ~ 7575380 (+) True LOC113543252
XM_026941350.2 mRNA upstream 176314 7572897 ~ 7575380 (+) False LOC113543252
XM_026941263.2 mRNA downstream 102063 7859024 ~ 7881717 (+) True lrrc6
XM_034297738.1 mRNA downstream 126934 7883895 ~ 7935093 (+) True kcnq3
XM_026941259.2 mRNA downstream 126934 7883895 ~ 7935093 (+) False kcnq3
XM_034297739.1 mRNA downstream 126934 7883895 ~ 7935093 (+) False kcnq3
XM_034297703.1 mRNA downstream 184117 7941078 ~ 7953336 (+) True LOC113543381
TU374748 other upstream 55775 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 616193 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 807086 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1524454 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1854864 5894504 ~ 5896830 (+) False shox2
TU375134 other downstream 506378 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 511748 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1054996 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1655362 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 2202368 9959329 ~ 9977901 (+) False pip4p1a

Expression Profile