RNA id: TU375132


Basic Information

Item Value
RNA id TU375132
length 2368
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC113543009
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8259258 ~ 8261712 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaataAAAGCAGCTCCTCGACTCTGAACACTTTGTCTGGTTTGGTTGCAGGTTGCTGCTGTATCTCCCTGCAGCAGAAGAGGTTTATTTAAACCAGGTTTAGCAGCAGAGCTCGTTAGAGAGGGTAGTTTAGTTGGTTAGTTGTTCAGCTGAAGGTTACTCGCTGTTACTGAGATGTTACTGAGTCTGCGCTCAGGTTAGACTGAAAGCACGAGCTCACTGGCTGTGTTCACATGCGCCTCCAATTCCGAGTAAAGTCTATACTCGAGTttcagccatattccgaatgcgatgtttatatgtgtacaggcatcggaatattcctgtatacatggttgttgtaagtatgcctgccATTACTGAATACcaagcctacagctaagcatctgttagcacccacagttccttgcggactgagcatgCGCAGATATCTCCTTTCAGGGGATTTTttgaataaagtgttttacatgcaacacatttctgattaaaacaggaaTAGTCCAGGGTGAGAATCAGAATACTGGCCTAATCTGAGTCAGGTAATCGGATTGCAAtgtttacatgactcagtaTTAATCAGAATATTGCctaattctgattaatatcagaatattgatgtgcatgtaaacatagccactgATGTGTGAATGAAGATGTTGTGTAGttgaattaaaaacacaaagccaTTAATGTTGAATATAAACTTATGTGCCCTTTTGCGTTTACTTTATAGGCTGTCAGAAAACGACGATGGCGTGTGGAAGGACTGCAGCTTTTCTGGGCCTTGAAATCCACAACTTAAATACAAGAGCCATTCCAGAAGTGACGTAAAAGCAAaccgtcacacacacagtgccatgCTGATGAATTGAAagcggtggtggtggtgggtatggcattggactactgatcaggaggttgtgagtttgaatcccagcatCGCCACACTTCCACCCCCGCCTTGGCTGTGTGTCCGTCCCACCCCCCAAACCAAACGCCTCgactgtaagtcactctggagaAAATGCATCAGCCAATCtggataaatgtaaatgaattgtTAGTGACACTGGGAAGACTTTCAGTAAAGctctggaagtgtgtgtggaaaaggAAGGCAATACACTTCACATTTTGCTTAATATTACCACATTTAAGATGTTTTTGAATGATGTCATGACTTACTAACATGactttgctttatttcaaaaGGAATTCAGATTGGTTTGAAAATAACACAGCtgacttgtgtgttttctgcagTTTTATTGTCCAGGTGTTGTGATGCAGCAGTACATGACCATGGTAAGTGTGCTGAGCAGTGAACAACAGTCACTGCACTACAGCTTCCTGTGGAACCCCAACTTTAACTCCCTCTGAGACCCATCATGCTGTGGGTCAATGATGAAAACTAGCCAAATCTGAGAGCTGAGAATCTGCCACCTATGATTATGCTAGAGAAGCTTGAgtgtgtgtgaggcgtGTGTGAGGCGTGTGTGAGGCGTGTGTGAGGCTGGTCTGAGCAATGATGTAAATCTACTTTGCTTGATGTGTAAGTCAGTAATAACGGCTTGCACTTTAATGATTGTCTCTACACTTGAACTGAGCTCAGACAGTATAacttttgtgtacattttaaatttggaGCAACAAATTGTCACCATTTTTcccatgtttgtgtgtctgttctCCAAGGATTGGCCAGCTGTGCAAGCATGTCTTCCACTTAGCCGTTGTTACTCCACCAGCAAACAATTTTTGAAGAGGTTTTCATGCTGAACAGGTTGGATATTAagaattgtgtatttttttaaatccattttttgaTTACCAGTTTGCAAAACTAGAGAGCTAGTGGCTACATTTTTGGTGCgaccttcctcctcctccatgttTTTCAGTTACAGTGCTTTCTCCTAGCAGACTGCTCAGATGGATAACGGTACTGTTGGCTTTGGACTGATTTAAGACTTTTGCTACATAGCAATAAgaaatttttaatgtttgtgtaatgtttttttttttttttttttttttttttttaaaacattaatccTCACCACATTGGACTTAACATTATCTCTGTATAACCATAACAAAATGAGAGCTATTTGATTGATCCAGTGCTAAAATCTCTCAATTCCCATTACATGATGTAAAAAGTTGGTCAGAAGAAGCAGCCTGCTTTAGAGCCTACATGGTCAATTTGGTTTAAACATAGTGGCAgaaaacatttgaattttttttattattattattttaaatgtcattttcccGTCTGATATTAAGGTTGGTTTGAAAGTGATATTATCCTGCTTTATTTGTAATGGATTACTGCAATTATTTGCTGAATAAAAATTTTCGAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375122 lncRNA upstream 188 8258829 ~ 8259070 (+) True G316741
TU375004 lncRNA upstream 214561 8044493 ~ 8044697 (+) True G316630
TU374778 lncRNA upstream 502304 7756763 ~ 7756954 (+) False fitm1
TU374760 lncRNA upstream 532156 7706377 ~ 7727102 (+) False G316419
TU374764 lncRNA upstream 549952 7703722 ~ 7709306 (+) True G316419
TU375142 lncRNA downstream 69798 8331506 ~ 8331786 (+) True G316752
TU375144 lncRNA downstream 70716 8332424 ~ 8333531 (+) True G316754
TU375146 lncRNA downstream 115077 8376785 ~ 8377093 (+) True G316756
TU375442 lncRNA downstream 326287 8587995 ~ 8588211 (+) True G317008
TU375461 lncRNA downstream 399578 8661286 ~ 8661776 (+) True G317027
XM_026941173.2 mRNA upstream 1597 8193755 ~ 8257661 (+) True myo10
XM_026941417.2 mRNA upstream 128776 8070565 ~ 8130482 (+) True adcy8
XM_026941416.2 mRNA upstream 128776 8071432 ~ 8130482 (+) False adcy8
XM_034314657.1 mRNA upstream 285262 7957043 ~ 7973996 (+) True oc90
XM_034297703.1 mRNA upstream 305922 7941078 ~ 7953336 (+) True LOC113543381
XM_034314850.1 mRNA downstream 13870 8275578 ~ 8327509 (+) True dip2cb
XM_026941045.2 mRNA downstream 73116 8334824 ~ 8379466 (+) True esyt2a
XM_026941046.2 mRNA downstream 73119 8334827 ~ 8379466 (+) False esyt2a
XM_034314688.1 mRNA downstream 73120 8334828 ~ 8379466 (+) False esyt2a
XM_026941385.2 mRNA downstream 124804 8386512 ~ 8422245 (+) False slco5a1b
TU374748 other upstream 563339 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1123757 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1314650 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 2032018 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 2362428 5894504 ~ 5896830 (+) False shox2
TU375134 other downstream 1631 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 7001 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 550249 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1150615 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1697621 9959329 ~ 9977901 (+) False pip4p1a

Expression Profile