Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580332.1 |
| length | 871 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 2 |
| gene id | LOC113543009 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 8259258 ~ 8261712 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU375122 | lncRNA | upstream | 1654 | 8258829 ~ 8259070 (+) | True | G316741 |
| TU375004 | lncRNA | upstream | 216027 | 8044493 ~ 8044697 (+) | True | G316630 |
| TU374778 | lncRNA | upstream | 503770 | 7756763 ~ 7756954 (+) | False | fitm1 |
| TU374760 | lncRNA | upstream | 533622 | 7706377 ~ 7727102 (+) | False | G316419 |
| TU374764 | lncRNA | upstream | 551418 | 7703722 ~ 7709306 (+) | True | G316419 |
| TU375142 | lncRNA | downstream | 69794 | 8331506 ~ 8331786 (+) | True | G316752 |
| TU375144 | lncRNA | downstream | 70712 | 8332424 ~ 8333531 (+) | True | G316754 |
| TU375146 | lncRNA | downstream | 115073 | 8376785 ~ 8377093 (+) | True | G316756 |
| TU375442 | lncRNA | downstream | 326283 | 8587995 ~ 8588211 (+) | True | G317008 |
| TU375461 | lncRNA | downstream | 399574 | 8661286 ~ 8661776 (+) | True | G317027 |
| XM_026941173.2 | mRNA | upstream | 3063 | 8193755 ~ 8257661 (+) | True | myo10 |
| XM_026941417.2 | mRNA | upstream | 130242 | 8070565 ~ 8130482 (+) | True | adcy8 |
| XM_026941416.2 | mRNA | upstream | 130242 | 8071432 ~ 8130482 (+) | False | adcy8 |
| XM_034314657.1 | mRNA | upstream | 286728 | 7957043 ~ 7973996 (+) | True | oc90 |
| XM_034297703.1 | mRNA | upstream | 307388 | 7941078 ~ 7953336 (+) | True | LOC113543381 |
| XM_034314850.1 | mRNA | downstream | 13866 | 8275578 ~ 8327509 (+) | True | dip2cb |
| XM_026941045.2 | mRNA | downstream | 73112 | 8334824 ~ 8379466 (+) | True | esyt2a |
| XM_026941046.2 | mRNA | downstream | 73115 | 8334827 ~ 8379466 (+) | False | esyt2a |
| XM_034314688.1 | mRNA | downstream | 73116 | 8334828 ~ 8379466 (+) | False | esyt2a |
| XM_026941385.2 | mRNA | downstream | 124800 | 8386512 ~ 8422245 (+) | False | slco5a1b |
| TU374748 | other | upstream | 564805 | 7695534 ~ 7695919 (+) | True | G316413 |
| TU374286 | other | upstream | 1125223 | 7133459 ~ 7135501 (+) | True | G316001 |
| XR_004580329.1 | other | upstream | 1316116 | 6937340 ~ 6944608 (+) | False | LOC113543138 |
| TU373737 | other | upstream | 2033484 | 6226717 ~ 6227240 (+) | True | G315581 |
| TU373444 | other | upstream | 2363894 | 5894504 ~ 5896830 (+) | False | shox2 |
| TU375134 | other | downstream | 1627 | 8263339 ~ 8264061 (+) | True | G316744 |
| TU375135 | other | downstream | 6997 | 8268709 ~ 8269198 (+) | True | G316745 |
| TU375607 | other | downstream | 550245 | 8811957 ~ 8812820 (+) | False | LOC117599964 |
| TU375892 | other | downstream | 1150611 | 9412323 ~ 9415164 (+) | True | G317390 |
| TU376185 | other | downstream | 1697617 | 9959329 ~ 9977901 (+) | False | pip4p1a |
