RNA id: TU375465


Basic Information

Item Value
RNA id TU375465
length 2037
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G317031
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8689435 ~ 8691471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGATATTTGTGTGGCCTAAGTGCTCATTGCAAAAAGACGGAACATCGGCTAGAACATGGAATATCTGCTAAAGAACTATACATAGCTTATCTTTGACCTCAATTTCACTCCAAGTACtgaggtgtacctaataaagcaATGTCTAAAGAAATCTGAACAGAGTCAGAAAGATTCAGCTCAAGCTATGACTCATTTACAGTACtgtcttaggcacccttttttttagtacaaactttgttatagatttttattttatgacctctacattattgattcagtacaaaaactttttagatttccaaacattagtttttcagcacaaaattgttacagaaaaatgtttgtatgtcagtaaagaaagcagcacttttcagacaaaaagacataatgaaggctgctgggttttgctgcaaaaataagaagcaagtgtgacagtctaagtctccagaagaactgtggctggttctgcaagatgacagtaacacttacagctaatttccttataaaacagcacaaattgtacctgagactactacatatattttttttaaagcgaaagatcgtcacaccaaatattgacttgaagtttcatttattactgtttactgctctttatagttttttttaaatgtagaaacatttaatttcattatttttgaaggcatctttgctctacagcatttctttgcatgtgcctaagacttttgtacagtactgtatatacagttcTGTTATTCATATTAGCcaataacatacagtacatgcagaGTTAGTGGCTGTGTCACTGAACATTCAAGAAAGGCTGGACCCTGTAATGGAAAGTCCAGGTCAAACAAAACCCTACTAGCAGTTTGGGACTCATTAAAATCATTGCATTGCACTAAAAATGTGCACCCTACAGCAGGGCTTCAGGTTTGAATCTGAGCTATGTCACATAGCCATGAATAAGATTAACTGAAGATGCAAAAGGAAAGGCACTTAATGATCAATAATTAGCACCTCTTCACACCTCCAACTCTCCACTTTTAAAAGATGTGTTTTTGCTGCTGTCTTATTCCAACTTTCAGTTAAAGCCCAATGGTCTAAATTTAACCAACCCAGAGGATGAGATCATTGTGGTCCACTTTACCATCTATGGAATGCTAACACAAGTATAACATttcttatatattataatgtaatatttctcAATGTAAAAAATAACTAATTACAATATTGCCAACTGTACTGAAGGTCAATCAAGACATGTTTGTGCTGACCTCAACAGAGGCACTGATGAATATATTTCTGAGCCAAAGTACAATGCAAATCTACTGAACATGTTAATATTCACAACACTGATCTAATAAGCCATGCTGGGTGCAGCTGAACCATTTCTATTGCTATGTCTCAGAGACAAcatcaaagttattattattattattattattattcataataatcatcatcattattactaCACAGAATAAAATACATCTAACACTATATTATAAACAGAGTGGGAATTCCCTACTACTGGCCCATACttagataataatataagtaataatataaatataacataaacaTCATTATAGTCTTTTTCTATAGTcattataatctttttttaacttcattttcTATTCCATAGCCATATGTTCCTTCATTGTACACTATTGTCAGGTGCTCTTCTAGACCCGATGCTTTACTAATTGAAAAGAAAATCGTAATTTGGTTCTACAGAATTGTTAGTGGATAGACTCTTGAATTACAAAGATATAGAATAGAAAAATGTGTACAAGTGAGTAATTGAACAGTGAGGAGTGACTttgtatgtaacattttttcTGGTTATGTTGCTTCTTTGAGAGACCAACCTTACAATCTCCTGAATAGTAGACAGCGTACAAAGAGAAGTGACCACAGGCATTAGAAAGCTAACAAATTTGGGCATAGTGATGCACATTTGCACATACTTGAGTTACCTGAATGATTAATTCAATGATTCACTTCTGCttatgtgactgtgtgtatgagtgtctgTTAGACCGTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375461 lncRNA upstream 27659 8661286 ~ 8661776 (+) True G317027
TU375442 lncRNA upstream 101224 8587995 ~ 8588211 (+) True G317008
TU375146 lncRNA upstream 312342 8376785 ~ 8377093 (+) True G316756
TU375144 lncRNA upstream 355904 8332424 ~ 8333531 (+) True G316754
TU375142 lncRNA upstream 357649 8331506 ~ 8331786 (+) True G316752
TU375493 lncRNA downstream 34870 8726341 ~ 8730818 (+) True G317045
TU375589 lncRNA downstream 102243 8793714 ~ 8793944 (+) True G317113
TU375601 lncRNA downstream 113799 8805270 ~ 8805725 (+) True G317125
TU375614 lncRNA downstream 128753 8820224 ~ 8821893 (+) True G317136
XR_004580314.1 lncRNA downstream 206798 8898269 ~ 8899873 (+) True LOC117599967
XM_026941126.2 mRNA upstream 11341 8667284 ~ 8678094 (+) True gtpbp4
XM_026940892.2 mRNA upstream 31836 8631553 ~ 8657599 (+) False slc39a6
XM_026940889.2 mRNA upstream 37252 8631553 ~ 8652183 (+) False slc39a6
XM_026940891.2 mRNA upstream 37252 8632672 ~ 8652183 (+) False slc39a6
XM_026940890.2 mRNA upstream 37253 8632672 ~ 8652182 (+) True slc39a6
XM_026941219.2 mRNA downstream 66486 8757957 ~ 8786203 (+) False med17
XM_034297747.1 mRNA downstream 67191 8758662 ~ 8786203 (+) False med17
XM_026941220.2 mRNA downstream 67603 8759074 ~ 8786203 (+) False med17
XM_026941221.2 mRNA downstream 67650 8759121 ~ 8786203 (+) False med17
XM_026941217.2 mRNA downstream 67697 8759168 ~ 8786658 (+) True med17
TU375135 other upstream 420237 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 425374 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 993516 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1553934 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1744827 6937340 ~ 6944608 (+) False LOC113543138
TU375607 other downstream 120486 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 720852 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1267858 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1496280 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 1844960 10536431 ~ 10562994 (+) False capn10

Expression Profile