RNA id: TU375658


Basic Information

Item Value
RNA id TU375658
length 245
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G317175
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8958809 ~ 8959053 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATTTCGTTACCAGACCGGGAGTAAGCAAACTTTCTCCGAGAGCTTCTGTGGATATACCGGGGACGACGTAGGAGTCCAAGTTCTTTAATGACTGATATACATGATGGAATGTTATGGCTGTTATATTCTATCAGTTGAGTGGCCGAGTAGTTCAAAAAAAGTTaatcttgatgattaactaatcttgtgcatttcattagtgacacctggctgctaattgcTAATTATGGAAATAGGAagggc

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580313.1 lncRNA downstream 60232 8897129 ~ 8898577 (-) False LOC117599966
XR_004580312.1 lncRNA downstream 60232 8897129 ~ 8898577 (-) True LOC117599966
TU375679 lncRNA downstream 60650 8897133 ~ 8898159 (-) False LOC117599966
TU375654 lncRNA downstream 103344 8845325 ~ 8855465 (-) True G317173
TU375610 lncRNA downstream 143830 8814761 ~ 8814979 (-) True G317134
XR_003404384.2 lncRNA upstream 84299 9043352 ~ 9072872 (-) True LOC113543052
XR_004580364.1 lncRNA upstream 90553 9049606 ~ 9072872 (-) False LOC113543052
XR_004580365.1 lncRNA upstream 112096 9071149 ~ 9072872 (-) False LOC113543052
TU375812 lncRNA upstream 117411 9076464 ~ 9077234 (-) True G317314
XR_004580358.1 lncRNA upstream 134141 9093194 ~ 9113004 (-) False LOC113543051
XM_034314656.1 mRNA downstream 4699 8903824 ~ 8954110 (-) False pitrm1
XM_034314655.1 mRNA downstream 4699 8903824 ~ 8954110 (-) True pitrm1
XM_026941012.2 mRNA downstream 4699 8903979 ~ 8954110 (-) False pitrm1
XM_026941222.2 mRNA downstream 200781 8726321 ~ 8758028 (-) True ift57
XM_034314764.1 mRNA downstream 244555 8690052 ~ 8714254 (-) False tmem71
XM_026940859.2 mRNA upstream 10151 8969204 ~ 8973271 (-) True LOC113542985
XM_026940864.2 mRNA upstream 10801 8969854 ~ 8973275 (-) False LOC113542985
XM_026940865.2 mRNA upstream 10801 8969854 ~ 8973275 (-) False LOC113542985
XM_026940863.2 mRNA upstream 10801 8969854 ~ 8973274 (-) False LOC113542985
XM_026940861.2 mRNA upstream 10801 8969854 ~ 8972811 (-) False LOC113542985
XR_004580311.1 other downstream 4699 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 73100 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 470180 8477223 ~ 8488629 (-) False vcpip1
XR_004576923.1 other downstream 1100195 7858496 ~ 7858614 (-) True LOC117595746
XR_004576922.1 other downstream 1102279 7856412 ~ 7856530 (-) True LOC117595745
TU375761 other upstream 10728 8969781 ~ 8973212 (-) False LOC113542985
TU376553 other upstream 1568229 10527282 ~ 10528250 (-) False ccl20a.3
trnaw-cca_17 other upstream 2589315 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 5772859 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 6268419 15227472 ~ 15229256 (-) False LOC113533479

Expression Profile