RNA id: XR_004580312.1


Basic Information

Item Value
RNA id XR_004580312.1
length 1376
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC117599966
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8897129 ~ 8898577 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaacaaaacaaaaagggtCGGCTTTTCCATAATCTTGGGGCTGCAACAGAAAAAGCCTGGTCACCTTTAAACCTCATTTGAGTATGAGTAATAGTTAAAAGAATTGATGTGAATGCTAGAGCTAGAATAAGCACAGAGGATATAGATATGGTGCTATAGATATAGATACAGCTTGGTACTATGCTTtgaaaacatataataaaacGTTGAACTATATTCTGTATATGAATGATAACCAGTGAAGGATGACCAAAACAGAGACCTTTTTCTGGTGCTGGTGTGGGGATCTGTGTTTTCGTGTTGGTGGTTACCTGCACTGATAATCAGTGTGGGGATCATGTGATCTGCATTGTGTGGCTGCTTGTCCTGGGTCACATGAggcatgtcacatgacacatTAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCCACTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAATAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGACCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGGTAGTTTGTCTTatgtgatttaattttttttaaattgttttatattggtatttaaaatgtgttgattaTGTACTTGTATTTGTAGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGCGGGGAGTATTGAATACTCTTGCAAAGTAGGCCAATACTTCTTGTATATGTTGGTTTTATGTGTGCTGGTGAATGAAATTGGGgattaatgtgtattatttctttttaaagggaCCAGGCCAGCCACTGTTCTATTGTCAGTGTACAagtctttttttagtttgtttgttggttgttttgtttgcctttggctttgtcctttttttttttttttgtccttggtCTAGTGTAACCCTGCCTTGACCAAGCCAGCGCGGTGGTCATTGTGTTGGGAGCTGGCTGTTctcctctttttgtctctgtataGGTTCTCTGTACAAGGCCGGATCTGCACCTCATTACTGCTCCTTTCAGTTGGGGGCTGCACTGAGGGGACACTATTTTGGTGTGTACTGGTAACATGCAACACGGTGTGGTATTTTGTAGTGGTAATTACTGaccttgtgtgtgcagtgtttgctATGTTGCATGCTTGTATGGTGTTGGGTttgttgtgtctgtctctctcatcagGGCCTCCTAGGAGAGGAGCTGTGGGTGCCGTGCCGACCCGACCTTATTAGTTTGAGAAGCTCCAGCCAGTTTCCCTTCGTCTCTTTTTCACATTAGCAATTGTACCTattcaaaattgtaataaatttgaGCTTGTGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375654 lncRNA downstream 41664 8845325 ~ 8855465 (-) True G317173
TU375610 lncRNA downstream 82150 8814761 ~ 8814979 (-) True G317134
TU375605 lncRNA downstream 91072 8805123 ~ 8806057 (-) True G317129
TU375604 lncRNA downstream 92116 8803451 ~ 8805013 (-) True G317128
TU375599 lncRNA downstream 96613 8800282 ~ 8800516 (-) True G317123
TU375658 lncRNA upstream 60232 8958809 ~ 8959053 (-) True G317175
XR_003404384.2 lncRNA upstream 144775 9043352 ~ 9072872 (-) True LOC113543052
XR_004580364.1 lncRNA upstream 151029 9049606 ~ 9072872 (-) False LOC113543052
XR_004580365.1 lncRNA upstream 172572 9071149 ~ 9072872 (-) False LOC113543052
TU375812 lncRNA upstream 177887 9076464 ~ 9077234 (-) True G317314
XM_026941222.2 mRNA downstream 139101 8726321 ~ 8758028 (-) True ift57
XM_034314764.1 mRNA downstream 182875 8690052 ~ 8714254 (-) False tmem71
XM_034314656.1 mRNA upstream 5247 8903824 ~ 8954110 (-) False pitrm1
XM_034314655.1 mRNA upstream 5247 8903824 ~ 8954110 (-) True pitrm1
XM_026941012.2 mRNA upstream 5402 8903979 ~ 8954110 (-) False pitrm1
XM_026940859.2 mRNA upstream 70627 8969204 ~ 8973271 (-) True LOC113542985
XM_026940864.2 mRNA upstream 71277 8969854 ~ 8973275 (-) False LOC113542985
TU375659 other downstream 11420 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 408500 8477223 ~ 8488629 (-) False vcpip1
XR_004576923.1 other downstream 1038515 7858496 ~ 7858614 (-) True LOC117595746
XR_004576922.1 other downstream 1040599 7856412 ~ 7856530 (-) True LOC117595745
XR_004576921.1 other downstream 1042681 7854330 ~ 7854448 (-) True LOC117595744
XR_004580311.1 other upstream 5437 8904014 ~ 8954110 (-) False pitrm1
TU375761 other upstream 71204 8969781 ~ 8973212 (-) False LOC113542985
TU376553 other upstream 1628705 10527282 ~ 10528250 (-) False ccl20a.3
trnaw-cca_17 other upstream 2649791 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 5833335 14731912 ~ 14745487 (-) False theg

Expression Profile