RNA id: TU376052


Basic Information

Item Value
RNA id TU376052
length 325
lncRNA type intronic
GC content 0.61
exon number 1
gene id G317521
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9808847 ~ 9809171 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGCATTAAAGTCCCGAATGAGCCCAGGGTCCAGGATGTCCCGGGCCGGGACCCAGGAGTGTTCCTCCGGGCCATAGCCTTCCCAGTCCACGAGATACTGCCGGGAGCCCCGTACTAGCCGGACATAGCGCGTATTCCACCCACATGATGAAGGTGGACCAGGAGGACGGGTTGTTGGCAGCCATACACCTCAGGGTGGTCTCGAGATCCTGGTTGATTCTCTCAGTCTGACCGTTGGACTCGGGATGGAACCCGGATGATAGGCTCACAGAGGCCCCCAGCGACTCACAGAAGGCCCGCCAGAATCGCGAGGAGAATTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580302.1 lncRNA upstream 96947 9705920 ~ 9711900 (+) True LOC117599959
TU376022 lncRNA upstream 103166 9705413 ~ 9705681 (+) True G317491
TU375904 lncRNA upstream 307007 9501292 ~ 9501840 (+) True G317401
TU375903 lncRNA upstream 307987 9500657 ~ 9500860 (+) True G317400
TU375897 lncRNA upstream 342878 9444709 ~ 9465969 (+) True G317395
TU376054 lncRNA downstream 1629 9810800 ~ 9811007 (+) True G317523
TU376057 lncRNA downstream 6106 9815277 ~ 9815657 (+) True G317526
TU376060 lncRNA downstream 10095 9819266 ~ 9819465 (+) True G317529
TU376155 lncRNA downstream 65825 9874996 ~ 9875820 (+) True G317618
TU376158 lncRNA downstream 69744 9878915 ~ 9879756 (+) True G317621
XM_034314596.1 mRNA upstream 166203 9532677 ~ 9642644 (+) False LOC113533645
XM_026925914.2 mRNA upstream 166203 9532679 ~ 9642644 (+) True LOC113533645
XM_026941149.2 mRNA upstream 589746 9168411 ~ 9219101 (+) True LOC113543105
XM_034314910.1 mRNA upstream 645653 9033569 ~ 9163194 (+) False LOC113543049
XM_034297745.1 mRNA downstream 20207 9829378 ~ 9861148 (+) False fndc7a
XM_034297744.1 mRNA downstream 20209 9829380 ~ 9861147 (+) True fndc7a
XM_034297746.1 mRNA downstream 20211 9829382 ~ 9861146 (+) False fndc7a
XM_026925101.2 mRNA downstream 134582 9943753 ~ 9952320 (+) True dnaaf6
XM_026925733.2 mRNA downstream 149822 9958993 ~ 9977916 (+) True pip4p1a
TU375892 other upstream 393683 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 996027 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 1539649 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 1544786 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 2112928 7695534 ~ 7695919 (+) True G316413
TU376185 other downstream 150158 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 378580 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 727260 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 727260 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 754664 10563835 ~ 10568896 (+) False eif4e2

Expression Profile