RNA id: TU376563


Basic Information

Item Value
RNA id TU376563
length 235
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G317964
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10575313 ~ 10575547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAAGTGGCCTACACTGGACAAGTGGTTTTGGCTCTCATTTAAAAATAGAGTTATTATTCCTGGCACAGTGAACAGAAGGCTGTATGAGTAATTTAATTCCATAGAGTTAAATAGATCCTGGTGTGTGTAGTTGCATTTTCAGAGCCAGCCAAAAAGAGAATagaaggaaagagagggagtgagagctGAACGCTCACAAAGGTGACCTCAgtgttactgaggttaaggttagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376562 lncRNA upstream 161 10574814 ~ 10575152 (+) True G317963
TU376543 lncRNA upstream 50539 10524486 ~ 10524774 (+) True G317946
XR_004580283.1 lncRNA upstream 55105 10517588 ~ 10520208 (+) True LOC117599937
TU376532 lncRNA upstream 65120 10504163 ~ 10510193 (+) True G317939
TU376333 lncRNA upstream 388187 10186306 ~ 10187126 (+) True G317761
TU376566 lncRNA downstream 6546 10582093 ~ 10582292 (+) True G317967
TU376619 lncRNA downstream 72374 10647921 ~ 10648193 (+) True G318016
TU376650 lncRNA downstream 131267 10706814 ~ 10707508 (+) True G318031
TU376631 lncRNA downstream 154864 10730411 ~ 10734083 (+) False camk2n1a
TU376632 lncRNA downstream 154864 10730411 ~ 10734083 (+) False camk2n1a
XM_026925353.2 mRNA upstream 6406 10563821 ~ 10568907 (+) True eif4e2
XM_026925354.2 mRNA upstream 6406 10563821 ~ 10568907 (+) False eif4e2
XM_034314752.1 mRNA upstream 12698 10536431 ~ 10562615 (+) True capn10
XM_026925398.2 mRNA downstream 79862 10655409 ~ 10704492 (+) True vwa5b2
XM_034314588.1 mRNA downstream 79889 10655436 ~ 10704492 (+) False vwa5b2
XM_034314591.1 mRNA downstream 136161 10711708 ~ 10719147 (+) True mul1a
XM_026925812.2 mRNA downstream 136161 10711708 ~ 10719147 (+) False mul1a
XM_034314592.1 mRNA downstream 136161 10711708 ~ 10719147 (+) False mul1a
TU376560 other upstream 6417 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 12319 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 12699 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 387489 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 597412 9959329 ~ 9977901 (+) False pip4p1a
XR_004580315.1 other downstream 824337 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 891752 11467299 ~ 11469499 (+) True G318439
trnap-agg_14 other downstream 972561 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 973568 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 997280 11572827 ~ 11572897 (+) True trnag-ccc_6

Expression Profile