RNA id: TU376576


Basic Information

Item Value
RNA id TU376576
length 162
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G317977
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10562367 ~ 10562528 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcTATATTTGAGATGATATGGAGAATGGCATATTGAGCAGGGAAATCATCAAACTGTGCATGTCTCAGGCCTTCCTGGACTGCAGTTCAGCCCATCTGGTCCAGATTTAAGCTTGCATTGTATCCATGCAGACAAGCTTACTGGGTTCTTCACACTAATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376550 lncRNA downstream 35893 10526265 ~ 10526474 (-) True G317953
TU376540 lncRNA downstream 39939 10520613 ~ 10522428 (-) True G317943
TU376534 lncRNA downstream 42104 10518471 ~ 10520263 (-) True G317941
TU376530 lncRNA downstream 65414 10496720 ~ 10496953 (-) True G317937
TU376510 lncRNA downstream 215047 10344638 ~ 10347320 (-) True G317918
TU376575 lncRNA upstream 5220 10567748 ~ 10568905 (-) True G317976
TU376759 lncRNA upstream 160378 10722906 ~ 10723111 (-) True G318127
TU376760 lncRNA upstream 160620 10723148 ~ 10724215 (-) True G318128
TU376845 lncRNA upstream 279140 10841668 ~ 10843291 (-) True G318198
TU376849 lncRNA upstream 283195 10845723 ~ 10847783 (-) True G318202
XM_026925864.2 mRNA downstream 34088 10527350 ~ 10528279 (-) True ccl20a.3
XM_026924978.2 mRNA downstream 101741 10393883 ~ 10460626 (-) False camsap2b
XM_026924977.2 mRNA downstream 101741 10393883 ~ 10460626 (-) True camsap2b
XM_026924979.2 mRNA downstream 101742 10393883 ~ 10460625 (-) False camsap2b
XM_026925321.2 mRNA downstream 169860 10347841 ~ 10392507 (-) True wdr47a
XM_026925752.2 mRNA upstream 7657 10570185 ~ 10584166 (-) True LOC113533548
XM_034314618.1 mRNA upstream 21990 10584518 ~ 10596849 (-) True chrng
XM_034314621.1 mRNA upstream 21990 10584518 ~ 10596848 (-) False chrng
XM_034314620.1 mRNA upstream 21991 10584519 ~ 10596847 (-) False chrng
XM_026925615.2 mRNA upstream 21991 10584519 ~ 10596847 (-) False chrng
TU376553 other downstream 34117 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 1589155 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 1608257 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 1676658 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 2073738 8477223 ~ 8488629 (-) False vcpip1
trnaw-cca_17 other upstream 985840 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 4169384 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 4664944 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 5124730 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 5124730 15687258 ~ 15724356 (-) False LOC113533563