RNA id: TU376634


Basic Information

Item Value
RNA id TU376634
length 3164
lncRNA type sense_over
GC content 0.44
exon number 3
gene id camk2n1a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10730346 ~ 10734088 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACCGTTCTGCCTGGGTTTCCTTTATGATCGCGGGATTGCCCCCATCCTACAGCagacactcactcacacactcacacacacactcacacacaccccgcTTACACTCTGCGCGCTTCCTCGCGCTGCTTCCCGCCAGGACGCACTGACTTCGCCTTCGCGCGCGCGCCCGAGCCCCCTCCTGCGCTGTCTTAAACCGCGGCGTTTCGCGGATATTGACAGGATTTGGTGCTGTTACTTGAACTGGGAGCTTCTGCTTCTTCGCTTCTGCTTCTTCTGTCGTCTGTTCTTCAGCTCGAACTTCTGTGCCAGCATGTCCGAGGTTCTGCCGTACACCGAGGGGAAGATGAGCGGCTACGGAGCGGACAACGACGTCAGCCAGATGTCCTTCAGCTGCGGGCTGCAGGACACGAGCTCGTTCTTCGGGGCGTCGCAGGCGAAAAGACCCCCGAAACTCGGGCAGATAGGCAGAGCAAAGAGAGTGGTCATCGAGGACGACCGGATAGACGAGGTGCTGAAGGGAATGACGGACAAAGCGTCCCCGGGCGTCTAAAGCTCCAGCGGCGCCTCGcagacatttcatttttaaccatCAGCGGTGTGGAGCAGCGCTCAGCTGTGCGGGATGCGGGATGCGGGAGGACGGAGAGACCGACGCGCTGCCACAGGGCGACAGGAGGGAAAGCACAGAGAGGTGGCGAGCACGAGATTCACTCGGCATTCGCCGGACATTCTACAAAACGAAAAGCcgatttctatttaaaaaaaaaaaaaaattttaaaaattattaataaataaataaaagcatagcTGCGCAGAAAGTCATCGACGCTGCCGCGGGTTCATGTGGCTCCATTAACCGCCTCTGCCTCCGCTTTCCACAGTGGACGGACTCGCCATTACTCCACCACCATTTCCTTCCAGAACGCGCCGTATTCACACTGACCTCCGCGCGCGCAGGACAAAGCACATGTCGAGCTTTATTATCGTCTCTGTACAGAACCTAAAACTCGAACTCTTAAAGCCTGTAGCCTTTACGCGCTTCAAAAACGTGAAAAGCGACGGGTGTGAACCCAAACAGCACCTGCTGACAGTGTAGAGTGCATTCCAGCTGCTAGTAGAGCTGTTTAtggtctaacacacacacacacacacacacacacacacacacacaagtacaaacaaacaaacaaacagcacctGCTCACAATGTAGAGTGCATTCCAGCTGCTAGTAGAGCTGTTTAtggtctaacacacacacacacacacacacacacacacacacacacacctacacatcaCCTGCTCACAGTGTAGAGTGCATTCCAGCTGCTAGTAGAGCTGGTtataatctaacacacacatacacacacacacacacacacacacagagcacctGCTCACAGTGTAGAGTGCATTCCAGCTGCTAGTAGAGCTGTTTatagtctaacacacacatgcacaaagtgTGTGCGATGGTGCGATGTTAATAGCTGTATTTATTCTCTTCATTTAAAATGGCTGATGAGGGTTAAATGTATAGCCTTCCATAGTATTTTGGCCCGATTTTCATGGCGATGGCCATGGTGGGCGTGCATTAAATTCACACAATCAAAATGACTCCAGATGAATAATAGATAATAGCCTATAAAAAATGACCCAATGTAATTAAACCTCTGCAAGCAAGttaattttatcttttaaaaagataaatggCATTGTCTACATTTTGAGTTGTGCTCCTCCACCTCTTTGCATGAACTTTTACCTTTGGTGCCAATGCAGCTGACGTCATAACTTTTATGCCGTATTCACATTACTGCGGAAAATCAACGTAGCGCATGATTTACACACTCCAGCACTGTCAGTGGAGCTGCATAGAGCTGCGTGTGCAGGTTTGTAAACATGGGGTGGCAAAGGGAGGGGCGAGACCACACTAAGGGGTAGCACCACTCACTTATGTAGCTATGGAAAAACAATGAAGCTGTTTGGTGCAAAATCATTGGCCATATAATTCAATTACTGTATTGgccttcttgttgttgttgtatagTTTCTAATGCTGGAGGTATTTGATTGAAATGTCTACACTATCACAATAATCACTTAAATCAACATAAGCTAGATATGATTCATTGTGCATGAATTACATAAGAATAATAGACCTGTAAGAGATGTGATTTGAGGTCAGAATTGGTGTGGCACGATTTATTTAAATGGTGGCAAGTGCTACAGCTGTGCCACCCATTTGACCTTCCCTCTAGGTCCATTGCAAACAGGTAGCATATAAGGCTAACATTACACAGACAAATACATTTGTAAACTATCCTTCAGGTTAACTAACTAAACTTACAGGTTGTTATGGGGTTTAATATCGTAAAAGCATCCAAAGGTTGTGGTTTTTTTAAGGTCAGTGCACAGTGGAGTTTAAGTATATTTTCAACCTTTGTCATTGTACTCTACCAGCACAGGGTGGAAAAGGGACAGGGACAACACTCAATTCAGGTCAATGgccatgcaaacatttttccacAATGATATGAATACAGCTTCACTCATGGCACGTTTGTTTTTAACAAAGtcagttttgtattttttgcatctaagtatttattatatatagcCTCTGCTATTTTATTGTCTTAAAATTCAACAAAAATGTTTCTATCTTGGAAaggaatgagaagatggcacaCCTGAAAGGGTTGTAAAGTCGTTTTGTATCAGACATGGgacttgtttttgtctttctttttctcccttcAAAGGGACATGCCGAATGTGCTTCGGGGTTTATTTGCACAAATCAATGTTACTACTATAACTAAGAAATCGTATACTGTGACTTGAGCTTCATTGATTAATTCGTTAGAAAATGGTGACTTTAGACTCTACTGCACTGTTTACGACTATCCTCAAATAACAGTGTTATTTGATGAGTTTCTGAGCATTATATCTATgggttttgttgtttattttgtaccATTCTTATAAAGAAATTGATTATGGTTTGTTGTGCATGAAACTAACTTTTCAACAACTGGCATCGTTTTATGAAGCAAAGAAGCAACAAAAATGTAATCGCATTCTGAGAATGATTCATTGTAAATTATGATGCCATTTTCACTGTACCTGGTGAATTAATAAATGGTGGGAAGAaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376650 lncRNA upstream 22903 10706814 ~ 10707508 (+) True G318031
TU376619 lncRNA upstream 82218 10647921 ~ 10648193 (+) True G318016
TU376566 lncRNA upstream 148119 10582093 ~ 10582292 (+) True G317967
TU376563 lncRNA upstream 154864 10575313 ~ 10575547 (+) True G317964
TU376562 lncRNA upstream 155259 10574814 ~ 10575152 (+) True G317963
TU376787 lncRNA downstream 107557 10841640 ~ 10911606 (+) False LOC117595750
XR_004576927.1 lncRNA downstream 107590 10841673 ~ 10842026 (+) True LOC117595750
XR_003403443.2 lncRNA downstream 111633 10845716 ~ 10846012 (+) True LOC113533665
XR_003403440.2 lncRNA downstream 113385 10847468 ~ 10847786 (+) True LOC113533661
TU376904 lncRNA downstream 225838 10959921 ~ 10962370 (+) True G318248
XM_026925810.2 mRNA upstream 11262 10713001 ~ 10719149 (+) False mul1a
XM_026925735.2 mRNA downstream 104672 10838755 ~ 10860296 (+) True ncapd2
XM_026925863.2 mRNA downstream 127876 10861959 ~ 10878656 (+) True acsm3
XM_026925891.2 mRNA downstream 146158 10880241 ~ 10897751 (+) True map6d1
XM_026925676.2 mRNA downstream 453715 11187798 ~ 11221863 (+) True LOC113533503
XM_026925046.2 mRNA downstream 504156 11238239 ~ 11253682 (+) True ap1s3b
TU376560 other upstream 161515 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 167417 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 167797 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 542587 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 752510 9959329 ~ 9977901 (+) False pip4p1a
XR_004580315.1 other downstream 665801 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 733216 11467299 ~ 11469499 (+) True G318439
trnap-agg_14 other downstream 814025 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 815032 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 838744 11572827 ~ 11572897 (+) True trnag-ccc_6

Expression Profile