RNA id: XM_034314779.1


Basic Information

Item Value
RNA id XM_034314779.1
length 3332
RNA type mRNA
GC content 0.44
exon number 2
gene id camk2n1a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10730346 ~ 10734088 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcacacacacacacacacacacacacacacacacagagagagttaAAACCCCGGACGGATGACTTCACCGTTCTGCCTGGGTTTCCTTTATGATCGCGGGATTGCCCCCATCCTACAGCagacactcactcacacactcacacacacactcacacacaccccgcTTACACTCTGCGCGCTTCCTCGCGCTGCTTCCCGCCAGGACGCACTGACTTCGCCTTCGCGCGCGCGCCCGAGCCCCCTCCTGCGCTGTCTTAAACCGCGGCGTTTCGCGGATATTGACAGGATTTGGTGCTGTTACTTGAACTGGGAGCTTCTGCTTCTTCGCTTCTGCTTCTTCTGTCGTCTGTTCTTCAGCTCGAACTTCTGTGCCAGCATGTCCGAGGTTCTGCCGTACACCGAGGGGAAGATGAGCGGCTACGGAGCGGACAACGACGTCAGCCAGATGTCCTTCAGCTGCGGGCTGCAGGACACGAGCTCGTTCTTCGGGGCGTCGCAGGCGAAAAGACCCCCGAAACTCGGGCAGATAGGCAGAGCAAAGAGAGTGGTCATCGAGGACGACCGGATAGACGAGGTGCTGAAGGGAATGACGGACAAAGCGTCCCCGGGCGTCTAAAGCTCCAGCGGCGCCTCGcagacatttcatttttaaccatCAGCGGTGTGGAGCAGCGCTCAGCTGTGCGGGATGCGGGATGCGGGAGGACGGAGAGACCGACGCGCTGCCACAGGGCGACAGGAGGGAAAGCACAGAGAGGTGGCGAGCACGAGATTCACTCGGCATTCGCCGGACATTCTACAAAACGAAAAGCcgatttctatttaaaaaaaaaaaaaaattttaaaaattattaataaataaataaaagcatagcTGCGCAGAAAGTCATCGACGCTGCCGCGGGTTCATGTGGCTCCATTAACCGCCTCTGCCTCCGCTTTCCACAGTGGACGGACTCGCCATTACTCCACCACCATTTCCTTCCAGAACGCGCCGTATTCACACTGACCTCCGCGCGCGCAGGACAAAGCACATGTCGAGCTTTATTATCGTCTCTGTACAGAACCTAAAACTCGAACTCTTAAAGCCTGTAGCCTTTACGCGCTTCAAAAACGTGAAAAGCGACGGGTGTGAACCCAAACAGCACCTGCTGACAGTGTAGAGTGCATTCCAGCTGCTAGTAGAGCTGTTTAtggtctaacacacacacacacacacacacacacacacacacacaagtacaaacaaacaaacaaacagcacctGCTCACAATGTAGAGTGCATTCCAGCTGCTAGTAGAGCTGTTTAtggtctaacacacacacacacacacacacacacacaaacaaacaaacaaacagcacctGCTCACAATGTAGAGTGCATTCCAGCTACTAGTAGAGCTGTTTATggtctaatacacacacacacacacacacacacacacacacacctacacatcaCCTGCTCACAGTGTAGAGTGCATTCCAGCTGCTAGTAGAGCTGGTtataatctaacacacacatacacacacacacacacacacacacagagcacctGCTCACAGTGTAGAGTGCATTCCAGCTGCTAGTAGAGCTGTTTatagtctaacacacacatgcacaaagtgTGTGCGATGGTGCGATGTTAATAGCTGTATTTATTCTCTTCATTTAAAATGGCTGATGAGGGTTAAATGTATAGCCTTCCATAGTATTTTGGCCCGATTTTCATGGCGATGGCCATGGTGGGCGTGCATTAAATTCACACAATCAAAATGACTCCAGATGAATAATAGATAATAGCCTATAAAAAATGACCCAATGTAATTAAACCTCTGCAAGCAAGttaattttatcttttaaaaagataaatggCATTGTCTACATTTTGAGTTGTGCTCCTCCACCTCTTTGCATGAACTTTTACCTTTGGTGCCAATGCAGCTGACGTCATAACTTTTATGCCGTATTCACATTACTGCGGAAAATCAACGTAGCGCATGATTTACACACTCCAGCACTGTCAGTGGAGCTGCATAGAGCTGCGTGTGCAGGTTTGTAAACATGGGGTGGCAAAGGGAGGGGCGAGACCACACTAAGGGGTAGCACCACTCACTTATGTAGCTATGGAAAAACAATGAAGCTGTTTGGTGCAAAATCATTGGCCATATAATTCAATTACTGTATTGgccttcttgttgttgttgtatagTTTCTAATGCTGGAGGTATTTGATTGAAATGTCTACACTATCACAATAATCACTTAAATCAACATAAGCTAGATATGATTCATTGTGCATGAATTACATAAGAATAATAGACCTGTAAGAGATGTGATTTGAGGTCAGAATTGGTGTGGCACGATTTATTTAAATGGTGGCAAGTGCTACAGCTGTGCCACCCATTTGACCTTCCCTCTAGGTCCATTGCAAACAGGTAGCATATAAGGCTAACATTACACAGACAAATACATTTGTAAACTATCCTTCAGGTTAACTAACTAAACTTACAGGTTGTTATGGGGTTTAATATCGTAAAAGCATCCAAAGGTTGTGGTTTTTTTAAGGTCAGTGCACAGTGGAGTTTAAGTATATTTTCAACCTTTGTCATTGTACTCTACCAGCACAGGGTGGAAAAGGGACAGGGACAACACTCAATTCAGGTCAATGgccatgcaaacatttttccacAATGATATGAATACAGCTTCACTCATGGCACGTTTGTTTTTAACAAAGtcagttttgtattttttgcatctaagtatttattatatatagcCTCTGCTATTTTATTGTCTTAAAATTCAACAAAAATGTTTCTATCTTGGAAaggaatgagaagatggcacaCCTGAAAGGGTTGTAAAGTCGTTTTGTATCAGACATGGgacttgtttttgtctttctttttctcccttcAAAGGGACATGCCGAATGTGCTTCGGGGTTTATTTGCACAAATCAATGTTACTACTATAACTAAGAAATCGTATACTGTGACTTGAGCTTCATTGATTAATTCGTTAGAAAATGGTGACTTTAGACTCTACTGCACTGTTTACGACTATCCTCAAATAACAGTGTTATTTGATGAGTTTCTGAGCATTATATCTATgggttttgttgtttattttgtaccATTCTTATAAAGAAATTGATTATGGTTTGTTGTGCATGAAACTAACTTTTCAACAACTGGCATCGTTTTATGAAGCAAAGAAGCAACAAAAATGTAATCGCATTCTGAGAATGATTCATTGTAAATTATGATGCCATTTTCACTGTACCTGGTGAATTAATAAATGGTGGGAAGAaacatgaa

Function

GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0004860 protein kinase inhibitor activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376650 lncRNA upstream 22838 10706814 ~ 10707508 (+) True G318031
TU376619 lncRNA upstream 82153 10647921 ~ 10648193 (+) True G318016
TU376566 lncRNA upstream 148054 10582093 ~ 10582292 (+) True G317967
TU376563 lncRNA upstream 154799 10575313 ~ 10575547 (+) True G317964
TU376562 lncRNA upstream 155194 10574814 ~ 10575152 (+) True G317963
TU376787 lncRNA downstream 107552 10841640 ~ 10911606 (+) False LOC117595750
XR_004576927.1 lncRNA downstream 107585 10841673 ~ 10842026 (+) True LOC117595750
XR_003403443.2 lncRNA downstream 111628 10845716 ~ 10846012 (+) True LOC113533665
XR_003403440.2 lncRNA downstream 113380 10847468 ~ 10847786 (+) True LOC113533661
TU376904 lncRNA downstream 225833 10959921 ~ 10962370 (+) True G318248
XM_026925810.2 mRNA upstream 11197 10713001 ~ 10719149 (+) False mul1a
XM_026925809.2 mRNA upstream 11197 10713007 ~ 10719149 (+) False mul1a
XM_034314593.1 mRNA upstream 11197 10713076 ~ 10719149 (+) False mul1a
XM_026925808.2 mRNA upstream 11197 10713147 ~ 10719149 (+) False mul1a
XM_026925811.2 mRNA upstream 11197 10713147 ~ 10719149 (+) False mul1a
XM_026925735.2 mRNA downstream 104667 10838755 ~ 10860296 (+) True ncapd2
XM_026925863.2 mRNA downstream 127871 10861959 ~ 10878656 (+) True acsm3
XM_026925891.2 mRNA downstream 146153 10880241 ~ 10897751 (+) True map6d1
XM_026925676.2 mRNA downstream 453710 11187798 ~ 11221863 (+) True LOC113533503
XM_026925046.2 mRNA downstream 504151 11238239 ~ 11253682 (+) True ap1s3b
TU376560 other upstream 161450 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 167352 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 167732 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 542522 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 752445 9959329 ~ 9977901 (+) False pip4p1a
XR_004580315.1 other downstream 665796 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 733211 11467299 ~ 11469499 (+) True G318439
trnap-agg_14 other downstream 814020 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 815027 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 838739 11572827 ~ 11572897 (+) True trnag-ccc_6

Expression Profile