RNA id: TU376787


Basic Information

Item Value
RNA id TU376787
length 305
lncRNA type read_through
GC content 0.47
exon number 3
gene id LOC117595750
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10841640 ~ 10911606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attaaattaaaagtgaAAGCTAATGGTGGTTGAGCCCAGTGATGAGACTATGGCATCTGTGAGCTGAATGACCCAGAGATTGTGCTCTGTGATGGTGGGTAATCTTGGCTGAGCAGTGGAGACTGACTGCCTTGCTGTAAGGGCCCACCTACAGCACAGCTAGCAACCAATCAGCATTCTTTGTTTCCCAAAGAAATGGGTCTAGCAAACTGATGGGAGCTTgcacatattctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376631 lncRNA upstream 107557 10730411 ~ 10734083 (+) False camk2n1a
TU376632 lncRNA upstream 107557 10730411 ~ 10734083 (+) False camk2n1a
TU376634 lncRNA upstream 107557 10730411 ~ 10734083 (+) False camk2n1a
TU376635 lncRNA upstream 107557 10730411 ~ 10734083 (+) False camk2n1a
TU376638 lncRNA upstream 107557 10730411 ~ 10734083 (+) False camk2n1a
TU376904 lncRNA downstream 48315 10959921 ~ 10962370 (+) True G318248
TU376903 lncRNA downstream 72621 10984227 ~ 10987576 (+) False G318248
TU376936 lncRNA downstream 96342 11007948 ~ 11009146 (+) True G318273
TU377003 lncRNA downstream 195189 11106795 ~ 11169139 (+) True G318331
TU377005 lncRNA downstream 201347 11112953 ~ 11119827 (+) True G318332
XM_034314779.1 mRNA upstream 107552 10730346 ~ 10734088 (+) True camk2n1a
XM_026925810.2 mRNA upstream 122491 10713001 ~ 10719149 (+) False mul1a
XM_026925676.2 mRNA downstream 276192 11187798 ~ 11221863 (+) True LOC113533503
XM_026925046.2 mRNA downstream 326633 11238239 ~ 11253682 (+) True ap1s3b
XM_026925045.2 mRNA downstream 326638 11238244 ~ 11253682 (+) False ap1s3b
XM_034314685.1 mRNA downstream 396415 11308021 ~ 11315878 (+) True LOC113533219
XM_026925192.2 mRNA downstream 412521 11324127 ~ 11342139 (+) True LOC113533220
TU376560 other upstream 272744 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 278646 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 279026 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 653816 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 863739 9959329 ~ 9977901 (+) False pip4p1a
XR_004580315.1 other downstream 488278 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 555693 11467299 ~ 11469499 (+) True G318439
trnap-agg_14 other downstream 636502 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 637509 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 661221 11572827 ~ 11572897 (+) True trnag-ccc_6

Expression Profile