RNA id: TU377149


Basic Information

Item Value
RNA id TU377149
length 2118
RNA type TUCP
GC content 0.48
exon number 2
gene id G318439
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11467299 ~ 11469499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGATGTTGCAGTGTTGTTAGGTTGATACAAGGCTGTTTCACCATGAAGAGCTTTTCAGAACTGTTACAGACACTTCTCATTCCCAGCTAAAATCTCACACATGTCCAGTCTTTCTGAACTACATAATAGCCTGCGCACTAACAGCTACACACGTTCTGTTGCATACATCTCACTGCTATGTTTAAGGCATGTGTCCAGGTCTACCAGGGCCTCCATACAGATTTAGAGTAGAACACAGTGGGCAGGTTATCCTGAGCGTCCCGGCTGTCCACGTGACTGTGCTCGGTGTCGGTCTCGTCGGTGTCTGAGCACAGGTCGTCGCTTGAGGTGCTGGACGGGGACGGGGAGAGAGCTGAAGGTCTGCCGGTGGCACTGGCTTCGCGTGGGGAGAGCACAGCGTACATCCCGTCCCCCGGCCAAGCCCCAGCGTTCCCACACTCTCCCATCAAATCACAGAGCAGATCCTGGAAGCGATCCTCGTCGTTCAGAGGCATGCACTCCAGCAGATGGTTGAGCAGATCCGCCGCGATGGTGGCGTCGATACCTGGACAGCTGGAGACGAACGTGTGCACCTCATGCATGCACTGGATGTAACCAGCGGCGAAGCGCTCACTCGCCTCGCGATTCATGCTGTCAGCTGCTGGAGTAAAGACAAAACACATGAGTGAAACACTCTGAATCCCAAAGTGGATCCATTTTTCCGCTTTAAGAGGTGAACATGCACTGGCAGCTGCTGCACGCGCACGCCGAGCTCACCTTTCGCTCTGTTTTGAAGAATACTTTCCACGTGCTTCACGGTCATCTCCAGGACTTCAGCGTTCTCCATCTTTGTCTGCGCCTAAACATGACCCAAAGAGCGTTAGAGTGATTATGCGTGCTGCTTCTGCACAAAACGAGCTGTCATCGTGTGTGTAGGCGTCAGACGTGGAAAAGTGATGAACGCAACTTACGTCTGAGTCGCTCAGGAGCAGGCGCAGCTCCTGCAAACTTTCATTAATGCGGGCGCGCCTCTTTTTCTCCACCAGCGGCTTTCTCGTCTGCACAGATGCAATATCACATAGCATAAGCATTGCTGCAAAGACCAGCAGAGCCAGGCATGATGGGAAGAGCACACAGTACCTTTCTGTCTCCTTTGATCCCGTAGTAGTCATCCTCACTCTTGCCATTGCGGGAGGCAGGGGCCATGTTGCTGTGTTTCCGatatccagagagagagagagagagagagcgctccAAACAAGCACGCAGTGCCGTTACGACTGCTGAATGGAGGGCAGATGGCCGGCGAGCGCAGTCTGAGACAAAGGTCTACACACGGTGCTAACAAGCGAGGCGGGTATTGTGCAAAAGTGGGCGACCAAGGGCTGCATTTATGGAGCCTGATTTACATGTGAATGGAGCGCGGACTGCGCGAGAGAGCTGACGGCGAGCTCGCGCATAAAGAGAGCCAATCATCTGCAGCGCCTTTGTCTCGCCTTCGAAAACCAACCCACCCTGAAACGTGTGTACTGGAGGAGAAGCATTCCCTTCCCCTGTCCCAGATCAGCGCTCTGTTCAGTCTGTTCAGTCCTACAGGCCAGAGTTTGAGTaaatccaacaacaacaacaacaacaacaacaacagcagcagcaacaacaacaactacaacagcagcaacaactacaacaccaacaccaacagcaacaacaacaacaacaacaataacagcagcagcaacaacaacaaacaacaataacagcagcaataacaaactactactactactactactaataataataataatagaggaTGTTAACCAGTGATGATGTTGgatattgttttttattagttaaaataAGTTTGTTAATGATTTGCAAGTTACAAACATCTGTACTGAATGACTTTGtgaatgaccaatcagaacagagcATTAATAAACCCCAGTCAAAATGAGAATTAGCTATTTCTGGATTATCACCTTTAATGTGCCATCCATGTGTTTATctgcaattaattaataactgcaattaaattatttaataaaacgtTTTAATTGACTTGGAATATTAATAGTGTTTTGAATGATTTGCTATCTAAATGCCTCTCAGACTAACCCCAGACTTTCCACTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377136 lncRNA upstream 63243 11403264 ~ 11404056 (+) True G318426
TU377003 lncRNA upstream 298160 11106795 ~ 11169139 (+) True G318331
TU377005 lncRNA upstream 347472 11112953 ~ 11119827 (+) True G318332
TU376936 lncRNA upstream 458153 11007948 ~ 11009146 (+) True G318273
TU376903 lncRNA upstream 479723 10984227 ~ 10987576 (+) False G318248
TU377440 lncRNA downstream 304444 11773943 ~ 11774148 (+) True G318647
TU377452 lncRNA downstream 329459 11798958 ~ 11799181 (+) True G318658
XR_004580299.1 lncRNA downstream 363809 11833308 ~ 11846411 (+) True LOC117599957
TU377478 lncRNA downstream 401268 11870767 ~ 11870966 (+) True G318683
TU377493 lncRNA downstream 555709 12025208 ~ 12025443 (+) True G318697
XM_034314677.1 mRNA upstream 2530 11399885 ~ 11464769 (+) False per2
XM_026925186.2 mRNA upstream 2530 11399885 ~ 11464769 (+) False per2
XM_026925188.2 mRNA upstream 2530 11399886 ~ 11464769 (+) False per2
XM_034314678.1 mRNA upstream 6231 11399884 ~ 11461068 (+) True per2
XM_034314684.1 mRNA upstream 92590 11357570 ~ 11374709 (+) True LOC117599968
XM_026925545.2 mRNA downstream 4346 11473845 ~ 11479551 (+) True itm2cb
XM_034314760.1 mRNA downstream 28828 11498327 ~ 11533561 (+) True gigyf2
XM_034314761.1 mRNA downstream 28828 11498327 ~ 11533561 (+) False gigyf2
XM_026925732.2 mRNA downstream 65634 11535133 ~ 11544725 (+) True snorc
XM_026925818.2 mRNA downstream 127200 11596699 ~ 11622845 (+) False pax3a
XR_004580315.1 other upstream 6231 11399884 ~ 11461068 (+) False per2
TU376560 other upstream 898403 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 904305 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 904685 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 1279475 10187751 ~ 10187824 (+) True trnar-ucu_12
trnap-agg_14 other downstream 78609 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 79616 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 103328 11572827 ~ 11572897 (+) True trnag-ccc_6
TU378000 other downstream 1295556 12765055 ~ 12772867 (+) False G319170
XR_004580321.1 other downstream 2367934 13837433 ~ 13895665 (+) False LOC113533270

Expression Profile