RNA id: XR_003403404.2


Basic Information

Item Value
RNA id XR_003403404.2
length 3667
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC113533221
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11394881 ~ 11411164 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGCTAGACTAGTAGGTGGGGACAAGACCAAGCAGAGACTTTAAGAGCATAATATGTCTTTTTGCACTGTATTCTGAAACAAACAGAGAACTGCACTTGAGATGAAGGAAAGCTGTATTAGTAGTGTTTTAATGAGAATAACATGACAGAGTGGTGTCTACAGTTACTTCAAGGATTCTTACGAGAGTTTATCTAGATATAATGTCAGCGATAATCAGTGAGAGGTGctttattttcaaaaagttGGCTGTAATCAATATGGCCTCAGATTTGTTAATGTTGAGCCTCAGAAAGTTTGTATTCATCCAGGTCTTTATATCTGTCAGGCAGTCAACCAGTGCATGAGGATGCAGTCTGTGTGAGGATTAGTGTATACGTAAATCTGAACATCATTAGAATAACATGGAACTCCAGACCCTGTAATCTGATGATACTGACAAGGTAGAGTATGTCTTTAATAAACTGAGCCTTGGGGAACACCATAAGAGAATGTCAAGACAAATCTGACCTAAATTtatcaataaaaacaaattgctgactgtcagaaataaaatattagatcCAGGAGTGGACAGTACCCATAAGTCCCATAATTTTTGTGAGTTGGAGCAGAAGTATATCGTGGCATACTATGTCAAAAGAAGCAGCTCAGCAAAATATGTTCAGCAACCCAGGATTAGCTGCACCCAACGAGTTGCTTGAAACTCTGACAAGAACAGTTTCAGTATTATGGCCGAAACTTTTCAAACAGGGCGTTTGAGGCCAAGGGTTCTTTGGGCTAAGCGGCTACCACATGCTCGCATAGGGAGCTTGCCCAGAAAAGGCTGGTTGGAAATAGGCTTGTAATTACTGAGCTCCTCTGGGTCAAGCCCTGGTCAAGCCCTTTTATAGAGCTGGATTGCAGCCAGTTTCAAGTTGGTGGGAACAGAGCCAGAACTAAGAGAGAAGCATTACTTATGTGTGGGCATGGTGAAAGAAGACATGTTTTAATTAGAGGAGTAAGCATAGAATAGCATACCTAGAGCCTTAAccgttgagccaccactgcccaaaaAAATAAAGGCTGCTTCAGATGGAAAGTGGTAGCTCTGGATGCCAACTTCGCAACAGAAGTTCCTGCAGAAGAATAAATGTTGAGAGTCAACCACTACCAGTAGGAGAGGGTGAAAAAGGTCTCGGTTGCAGATTTGTGGGTGGGGAAGGGTTGGCACCTCTCAAGATCAGAGGGCAAACTGTGTCTGCAGTGTTGGAGGAAGGGGCAGTGGAAGAGAGTCGTTCCCAACCTGATGGCCTGTGGGTAAAAATTggttttcagcatttttgttcTTGCTTTTAGACTCCTGTAGCATCTTCCTGATGGTAGGAGTGTGAGCAGGCTGTGTTGGGGGTGGCTATTGTCTTTAATGATGTTGTGGGCCCTCGTAGAGGCTCTCCAGTGTTGGTAAGGCTGTTCCAGAGATGGCTTGGGCAGCTGTCACCACCTGCTGCAGAGCCTTACGGTCCTGAGCTGTGCAGCCTCCAAACCAGACTGTGATGAAGCTGTTGAGGATGCTCTCAATTGTACATCTGCAGAAGCTGCTGGGGATTCTGCTTGGCATGCCGAATTTCCTCAGCCTTCTCAAGAAGTACAGACGCTGACGAGATTTCTTCACCAATTGTGTAGTGTTGTGAGACCAGAGGCTGGATTGAGAGAAGTGGACACAGCTGGACTGTTTCATGCCACCTCTCATCTTCTCATCTTCAATATTTGCATTTACCCTTATACCCATGTTATCATAGGAACTGTGTTCAGAATGTTtcaatatttgtttttgaatttttatcctttgttcctttaaaataaaattaaaatgctctGTGTGATGTGCGTCACACATATTGTAATTAACATGGTTGCAAAGGCAGCCCCGTTCCTAATTTACAAAGCACATTTTCTGATGGTTTGTGGGTCTGTACCCTAATTCGTGGTCCAGTTGTTACTTATGAGTGTCAAACAAACCTACACCTATTCCTATAATGTTTTGGACAAGGTTCATTTGGAAGAATATTGCATTTGTTCCTTGGTGCAGAATGAATGGacacataaaatattaaagtacaGGCCTAATAGTTTCTCCTGTATTTGGTCCAATACACTGCAATGATTTAAATTAACATGAGATATGACTCTCATGAGATTAAGACTATTGCCACctccaaaaccaaaacaaaaaaagctttctgtgtaactgtgtattTGCCTCCAGTTGtcctgcagttatttttgttgatCACTTTGTCTGTAAATGAATTCTGCCCTTTGCTGTTTGATAATGTAAAGAGGAGGCGAGACAATCAGCACCACAGCATGTAACATGTATTATTCTTTGATTTAAACAAGCTAGGTTGTTGAGTTCAGTGATGTTTGACTATAAACCAGTTCACTGTTCTTAGAGTCTTCCATCCTGGAGCACGCTGCCACCTACTGTGTCTAGGTATATCTCAGTAGTCTGTCTTATAACTGTTTTAAAAACCCACTGTTACAATCAGTCGTTTACAGTTCTTCTGCAAATCCTTACTTATACATTTGTAGGTTTGTTAGTGAggatgtaaatgttttctgtcagAAATCACATGATCTCAGGGGTCtttagatattttaattttcttttgcaaaatgtacagtatttttgattgtattttagaatatatttacaaatagtTACTTACAAAAAGAATTGAATGTCACATTTAGACAAAGCATTTTACATAGATTTGTCATGTTTGAAGATTATACTGAAAGCCTCAAAATGTTGAGATCAGTTCAGTCTGGACTCCATTactcccacacacatacacattatgaTCTAGCAGCAGGTGGTACAAAGTACTTCTAGGGCTTTCAGTATGACTCCACAACATTGAGTATTAAGTGACAGAAGAAGCAGATGAACATGGCACGCATATGATGTGTTTGTCGTCTTTGACACTGACAAGAGATTCAACAGGTGAACTAGATACATAATTGGACAGAATTATGAGATGTTAGTGCAGAAAGCCAGAGGAATTGTGTTTTGGAAGGTGGAAAAGGCAGTCTGCAGTATAAGTGACTGTCAAACACAAGCTGCTCTATGTAGTATGATTCATCCTGCTCCATGTAGCAGAAATTCTGGATCCATTTAAAAGTACCATAATAGATTAGAAAAGAACACTAAGCTGTCTTTACCTCCTGATAGTTATCACTAAAATATGTCTGATTTTGCcagtttttaaaatggaaaagtaGGCTCTGGTGAAACTGATCCTCccaaacacacaacataacacaacatatagattaaaaaaaaaaaaaagactaccaGTGATGAGCAGTGGGTGCGGTTTGCCCGGATGTGGCTTAAAAGTGCAGACAACTTGCTAATTGTACAGATTCAAGCAGTGTAGGCATTCCTTCATTTTGTCAACTGGAACCAGGTGTGTAACTGCTTAGATGGAACGGAACTGCACCCACACTGACATTTTTTGAATCATAATGCTACATTAAGACAAGGCTATAAAAGGCTATGTATCCAGATCTCAGCCCAACTGAACACCTattggagattttggagtgatgtgAGACAGTGCTGTAAACAACCATCAAAACAATAAGTAAGGgaatatgttctttttttactgtccacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377193 lncRNA downstream 207481 11187197 ~ 11187400 (-) True G318479
TU376961 lncRNA downstream 385711 11007152 ~ 11009170 (-) True G318293
TU376853 lncRNA downstream 473319 10847475 ~ 10921562 (-) False G318202
TU376854 lncRNA downstream 503326 10845723 ~ 10891555 (-) False G318202
TU376851 lncRNA downstream 517586 10845723 ~ 10877295 (-) False G318202
TU377417 lncRNA upstream 208712 11619876 ~ 11705877 (-) False wu:fb63a08
XR_004580347.1 lncRNA upstream 218406 11629570 ~ 11631921 (-) True LOC117599995
XR_004580348.1 lncRNA upstream 218406 11629570 ~ 11631912 (-) False LOC117599995
TU377432 lncRNA upstream 278325 11689489 ~ 11693334 (-) True G318639
TU377454 lncRNA upstream 390483 11801647 ~ 11801862 (-) True G318660
XM_034314683.1 mRNA downstream 69635 11287176 ~ 11325246 (-) False gbp2
XM_034314682.1 mRNA downstream 86727 11287176 ~ 11308154 (-) False gbp2
XM_034314681.1 mRNA downstream 86727 11287176 ~ 11308154 (-) True gbp2
XM_034314680.1 mRNA downstream 88660 11287176 ~ 11306221 (-) False gbp2
XM_034314679.1 mRNA downstream 88780 11287176 ~ 11306101 (-) False gbp2
XM_026925675.2 mRNA upstream 55956 11467120 ~ 11468787 (-) False hes6
XM_026925674.2 mRNA upstream 55956 11467120 ~ 11468787 (-) True hes6
XM_026925725.2 mRNA upstream 81430 11492594 ~ 11496391 (-) True LOC113533529
XM_026925340.2 mRNA upstream 138619 11549783 ~ 11572390 (-) True acsl3b
XM_034297713.1 mRNA upstream 273671 11684835 ~ 11705835 (-) False wu:fb63a08
TU376553 other downstream 866631 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 2421669 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 2440771 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 2509172 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 2906252 8477223 ~ 8488629 (-) False vcpip1
trnaw-cca_17 other upstream 137204 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 3320748 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 3816308 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 4276094 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 4276094 15687258 ~ 15724356 (-) False LOC113533563

Expression Profile