RNA id: XM_034297715.1


Basic Information

Item Value
RNA id XM_034297715.1
length 6014
RNA type mRNA
GC content 0.47
exon number 28
gene id wu:fb63a08
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11619876 ~ 11705877 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAATTGCTTTGAAAGACTACCAAACACAACAGTAAGAGTAAGATAGCAGAAAACCACAACTACCACTGCTGATTCTTAAGGTAGAGGCAGTAAACTTCTAAAAAGGGATATAATGGCAAGGCATAAGTGGCTTTGCCTTCTGTTAATAATCTGCATATTTGTGATGATCACTGAAGCTTCATTAAGTAAGCCTTCAATTAATCTTCCTGACTGGGGGCCAAATGCAGATTATATTACAAAGTGTGATTTTGATAGTGATCAGTCTCCATTCTGTGACTGGAGTGCACAGGGGTTAATCAGAAGCCAAGCAGGACATGAGAAATTCTACCTCTCAAGAGATCCAATGAGCCCTGAATCTTGGTTAAAGAGTGAGGTTCTGTATCTCTCTGGAGACTCGTGTCTTGAATTCTGGTATTACAAACCAGGGCATGAAAGCTCAGAACTGAGAGTCCTGCTAAGTGATAATGATCTCCTAACACAAATATGGAGTTCTCTGCACACTGAAGTCCACACCTGGAGGCAGGTGCTCATTCCGCTGAGTTACTCAGAGATTTCTGTGAAGATTATTTTTGAACTTAGGCATAAACAAGGAATGGAAGAAACTGTCTTTGATAGGATTGGAGTACAGCGGGGACTGTGTGACTCTCAATGCCATCCAGGCACTCAGTTCTGGACAGATGAATCCACTCAGTGCACCTGTATTGAAAGTCAGCTGACCTGTGCCCAAATTGCCTGTGGGGATGGTCAACCCTGCAGTAAGACTGTTCAGTCCAAACAGTCAAGTGACTCATTCGCATCTGGCACCTGCAAAGTAACGAGTGACCTGCGATACACCACATTTGATGGGGTCAAATCCTGTTTCATGGGTCATTGTATCCATGTACTGACAGAGGTGTGCGATGAGGCTGGATTGCTTCCGGACTTTGCAGTGGAGGCGAAGAATGAGCAAATAGGCAAATCATCTAAATTCCAAATCCAGCAGGTGAATCTGAACGTACAAAGTCTAAGAGTGACTCtgctgagaaaaaagaaaagaaaaatcatgGTAAATGGTATTTGGAGGAATCTCCCCCTGAGTCTAGATAAAGACACAATAAAAATCAGTGCCCATGGACCAGCTGTGGTGCTTCAGACAAACTTCAATCTGTCCATTTCTTTTGCCACATCTGGTGCCCTTCAGGTAACCATACCAATCCAGTACTCAGACAAACTCTGTGGCATGTGTGGCAACTTTAACAATGTAATGGATGATGATAAGAACATGTCAGGCAGATCTCTGGTCAAGGACACCCAGATTCTGGGGCAGAAGTGGAAGAGTGCCAATTCCCTCTGCCAAGAGGCCATTGTACCAAGCATGTGCTCAGAATCTGAGAAGCTGGAATATGAAAGCAATATGTACTGCGGAGTTCTGCTGTCCCAAAATGGTCCCTTCTCTAAGTGCTCTTCTTCTCTTGACACTTCAAGCCTCTTCTGGAGCTGTATATCTCAGATGTGTACTACTAAAGGAGATCATAAAGCCTTCTGTGATGTCCTGCAGGCAGTTGAAAAGTCCTGCAGTGAGGCTGGAATTTCTGTGACTGGCTGGAGAAATGCAACTCACTGTTCTCTGGCCTGTGGGTCTAACAGCCACTTTAATGCCTGCTCCAGAGATTGCCCTGCAACTTGTTCTGACCTAGATGCTGCAGAGGATTGTGGAAGTTGTCAAGAAAGATGTGATTGTGATGATGGTTTCCTGCTAAGTGGAGGAAAGTGTGTACCTGTGGAAGACTGTGGGTGCTGGGTGGATGAACAGCACTATGAGAGAGGAGAGACATTTATGGAGGGTGACTGTGAAAGTCTGTGCACATGTGCAGGCCATGGCAATATTCAGTGTTCAGCTACTTCCTGCCTAGCCCATGAAGTGTGTAAAGTTGAGAATGGGGCCATAGGATGCTTCCCCTCCAGCCGAGTGACCTGCAGTGTCTATGGTGATCCCCATTACATCACCTTCGATGGCAAGGCCTATTCATTCCAGGGAACCTGCAACTACACCATTGCTAAAACATGTAGCGCTGGTGCAATTCAGTTCACACTAACAGCGCGGAATGAGGGGCTGAGAAACTATTCATCTTCATCTCTGAACTCTGTGGTTCTGGAGGTGGATGGCTTTCACCTTGCAATCAGAAAGAACAAGCTGGTTTATGTGAATGGAAGCCAAATCACTCTTCCTTTTTCATATAGCACCTCAGTGAGTGTGTCCCAAACAGGTCCATATGTGATAGTGGAAACCAACTTTGGTTTGAGGTTCCTGTTCAATGGAAATGACCGGCTCTTTGTGCAAGTAGACGAGAGACACAAGGGCAGGATGTGCGGACTCTGTGGAACCTACTCTGGAAGTCAGTTTGATGACTTCTTGACACCTGGAGGCAATATAGTCCCATATCCACATGATTTTGCTAATAGTTGGAATACTCTTGACAAGGACTGGCCTTGTATAAACGGCTCTCAGAATAAACCTGAATGTTCACCTGAGCTGGAGAGCAAGGGATTTCAGGAGTGTAGTAAGCTGTATGGAGATGACTTCAAAGCCTGCCACTGGTTCGTGCCCCCTCAGATCTTTGTGAACAGCTGTGTGCAAGACTATTGCACCTCAAGGGGGGATCAGACCCAGCTATGTACATCTCTACAAAATTATGTGGCAGCCTGTGAAGTGTCTGAGGTGTTTCTGGGAGACTGGTGGAAAGGCACAGTCTGTGATATTCCAACCACACCACCAACAGCAGAACCAGGCAcctcaacaccatcaccacccaccaCCCCAAATTCCAGTGCAAGTTGTTCATGGAGCTGCAACTTTGACCAGGATGAATGTGGATGGGAACAGTTAATCCAGGACAGTTTTGATTGGACAAGATGGTCTGGATCAACACCCTCTAATTTCACTGGCCCATCCAGTGACCACACTACAGGAAGTGGcttttatatgtatattgaGGGTGATGGAGTCTACCATGGTGACTCGGCACGTATGATGAGTCCAGTATGCAATACTTCGGGCACCCAGTGCATGACCTTCTGGTATCACATGTATGGTTGGGCAACATCCATGTTGCTTAATGTCTACCTGCTAGAAGAGAATCATGCCACCAAAATATGGTCTAGAGCTAATAATCAGGGCAACCGCTGGCACCTAGCCCAAATTGAGATCAGCCCAATGGGACCATTCCAGATTATTGTGGAAGGCATTAGGGGTTCAAATGCTCAATCAGATATGGCATGGGATGATGTTACCATAGTACATGGAAAATGTGCAGAAGTTAGCGTGATGCCTGAACCTGAGGAACCATCACCAACCAGTGGAGACCTGTCTATTACTACCCCAGTGTGCGAAATGAACTGCAATTTTGACAACAATCTTTGCACATGGAATCAACTGTTGACTGATGTTTTCGATTGGACAAGACACAGTGGTCCCACCCCTACATCAATGACTGGGCCCTTGTCTGATCACACAACAGGAACTGGTTACTACCTGTACATTGAGGGTGACAGCGCCACTCATGGAGACACAGCACGTCTCCTCAGTGAGGAATGCTCTGATGTGCAACCCCAGTGTCTGCAGTTCTGGTACCATATGTACGGCTCCAGCTGGACTATGGGTCTGACTGTCTACTTATTGCATGGGAATGTGGCCCAGGAGgtctggagaaagagagaaaaccaGGGGAATGCCTGGCATCAGGCTCTAGTGGACATCAGGCCTCATGACAAATTCAGGattttatttgaagGACGCAGAGGAGCCAGTGTTACGTCAGATGTGGCTCTGGATGACGTCTCTATACACAGAGGACCCTGTGCAGATTTAGTAAACCATCAGACTATTTCACCTGCACCTGGAAAGCCGACACTAATCCCTACAGTCACCAGCCCCACTACAAAATCTGCATTCTCACCTGTGTGCACATTCGACTGCAATTTTGACAACAACCTGTGCACATGGAGTCAGTTGGCGACTGACGTTTTTGACTGGACGAGACACAGCGGTCCCACTTCTACAGCAATGACTGGCCCCTCATCTGATCACACAACAGGAACTGGTTACTACCTGTACATTGAGGGTGACAGTGCCACTCATGGAGACACAGCACGTCTCCTCAGTGAGGAATGCTCTGATGTGCAACCCCAGTGTCTGCAGTTCTGGTACCATATGTACGGCTCCAGCTGGACTATGGGTCTGAGTGTATACCTGTTGCATGGGAATGTGGCCCAGGAGgtctggagaaagagagaaaaccaGGGGAACGTCTGGCATCAGGCTCTAGTGGACATCACACCCCGTGGCAAATTCAGGattttatttgaagGACGCAGAGGAGCCAGTGTTACGTCAGATGTGGCTCTGGATGACGTCTCTATACACAGAGGACCCTGTGCAGATTTAATAAACCATCAGACTATTTCACCTGCACCTGGAAAGCCGACACTAATCCCTACAGTCACCAGCCCCACTACAAAATCTGCATTCTCACCTGTGTGCACATTCGACTGCAATTTTGACAACAACCTGTGCACATGGAGTCAGTTGGCGACTGACGTTTTTGACTGGACGAGACACAGCGGTCCCACTTCTACAGCAATGACTGGCCCCTCATCTGATCACACAACAGGAACTGGTTACTACCTGTACATTGAGGGTGACAGTGCCACTCATGGAGACACAGCACGTCTCCTCAGTGAGGAATGCTTTGATGTGCAACCCCAGTGTCTGCAGTTCTGGTACCATATGTACGGCTCCAGCTGGACTATGGGTCTGAGTGTATACCTGTTGCATGGGAATGTGGCCCAGGAGgtctggagaaagagagaaaaccaGGGGAACGTCTGGCATCAGGCTATAGTAGACATCACACCCCGTGGCAAATTCAGGattttatttgaagGACGCAGAGGAGCCAGTGTTACGTCAGATGTGGCCCTGGATGACGTCTCTATACACAGAGGACCCTGTGCagATTTAGTAAACCATCAGACTATTTCACCTGCACCTGGAAAGCCGACACTAATCCCTACAGTCACCAGCCCCACTACAAAATCTGCATTCTCACCTGTGTGCACATTCGACTGCAATTTTGACAACAACCTGTGCACATGGAGTCAGTTGGCGACTGACGTTTTTGACTGGACGAGACACAGAGGTCCCACTTCTACAGCAATGACTGGCCCCTCATCTGATCACACAACAGGAACTGGTTACTACCTGTACATTGAGGGTGACAGCGCCACTCATGGAGACACAGCACGTCTCCTCAGTGAGGAATGCTCTGATGTGCAACCCCAGTGTCTGCAGTTCTGGTACCATATGTACGGCTCCAGCTGGACTATGGGTCTGAGTGTATACCTGTTGCATGGGAATGTGGCCCAGGAGGTCTGGAGAACGAGAGAAGACCAGGGGAACGTCTGGCATCAGGCTCTTGTGGACATCAAGCCCCATGACAAATTCAGGattttatttgaagGACGCCGAGGACACAATGCTAGGTCAGATGTGGCTGTGGATGACATCTTTTTCCACAGAGGAACCTGTGCAGatttaattaaacatttggTTGGTTCACCTATACCTGACGTTACTCAACAGTAATCTCTACGGTCAGCAACAGATCTGCAACTTCACTGCCTCTTAAATAAACCATTACAGTCGCAGTTTGCCATCCTTTCACAAACTTCAGCACCTGAGCCATAACATACCATCTCTCTCAGTCTCCTAACAATCTGGACATTTGGCTTAAGTTACCAGTCTTGCCTAACTAATCACTGATATTGATGAATCTATGATTGTTTTGCTGTTAGATTAtctaacaaagtacaattatttTGTTACTGTACCTCTGTTCAAGTAACTGCACTTTATATGAGTTTTTCTTTCAcgtgataatttttttttacttttactcactACATTTCAAAGGGAAGTCTGTACTTTCTATTCAGTACTTTTTAAGCagttgaataaaatataaactctaACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580347.1 lncRNA downstream 52914 11629570 ~ 11631921 (-) True LOC117599995
XR_004580348.1 lncRNA downstream 52923 11629570 ~ 11631912 (-) False LOC117599995
XR_003403404.2 lncRNA downstream 273671 11394881 ~ 11411164 (-) True LOC113533221
TU377454 lncRNA upstream 95812 11801647 ~ 11801862 (-) True G318660
TU377875 lncRNA upstream 878030 12583865 ~ 12584089 (-) True G319059
TU377987 lncRNA upstream 928058 12633893 ~ 12648886 (-) True G319163
TU378012 lncRNA upstream 1048933 12754768 ~ 12779226 (-) True G319178
TU378017 lncRNA upstream 1058419 12764254 ~ 12765991 (-) True G319182
XM_026925340.2 mRNA downstream 112445 11549783 ~ 11572390 (-) True acsl3b
XM_026925725.2 mRNA downstream 188444 11492594 ~ 11496391 (-) True LOC113533529
XM_026925675.2 mRNA downstream 216048 11467120 ~ 11468787 (-) False hes6
XM_026925674.2 mRNA downstream 216048 11467120 ~ 11468787 (-) True hes6
XM_034314679.1 mRNA downstream 378734 11287176 ~ 11306101 (-) False gbp2
XM_026925335.2 mRNA upstream 358031 12063866 ~ 12363593 (-) False LOC113533285
XM_026925333.2 mRNA upstream 358031 12063866 ~ 12363593 (-) True LOC113533285
XM_026925363.2 mRNA upstream 730868 12436703 ~ 12523017 (-) True gpc1b
XM_026925637.2 mRNA upstream 929222 12635057 ~ 12722764 (-) False gpc5c
XM_026925636.2 mRNA upstream 929222 12635057 ~ 12722763 (-) True gpc5c
trnaw-cca_17 other downstream 136396 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 1156585 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 2711623 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 2730725 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 2799126 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 3026077 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 3521637 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 3981423 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 3981423 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 4651739 16357574 ~ 16367004 (-) True G321462

Expression Profile