RNA id: TU377454


Basic Information

Item Value
RNA id TU377454
length 216
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G318660
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11801647 ~ 11801862 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctggcTCGGCATTgaccctgaaggctccggcatTGCCCTCCAAGCCGCTGCgtaccacctcagcgctggtgggCAAAGGGTACATGGCAGCAGGCCAGGCTGGCACTtgcctgcacaccatggcggtgttgcAGGCCTACCAGGCCATTCTACTGAGAGAGCTGGACGAAGGCGGGGAGATTAAATCTGTGGATGTCGCCGAGCTCAGACGAACC

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377417 lncRNA downstream 95770 11619876 ~ 11705877 (-) False wu:fb63a08
TU377432 lncRNA downstream 108313 11689489 ~ 11693334 (-) True G318639
XR_004580347.1 lncRNA downstream 169726 11629570 ~ 11631921 (-) True LOC117599995
XR_004580348.1 lncRNA downstream 169735 11629570 ~ 11631912 (-) False LOC117599995
XR_003403404.2 lncRNA downstream 390483 11394881 ~ 11411164 (-) True LOC113533221
TU377875 lncRNA upstream 782003 12583865 ~ 12584089 (-) True G319059
TU377987 lncRNA upstream 832031 12633893 ~ 12648886 (-) True G319163
TU378012 lncRNA upstream 952906 12754768 ~ 12779226 (-) True G319178
TU378017 lncRNA upstream 962392 12764254 ~ 12765991 (-) True G319182
TU378022 lncRNA upstream 970787 12772649 ~ 12796934 (-) True G319186
XM_034297713.1 mRNA downstream 95812 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297716.1 mRNA downstream 95812 11684835 ~ 11705835 (-) False wu:fb63a08
XM_026925718.2 mRNA downstream 95812 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297715.1 mRNA downstream 95812 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297714.1 mRNA downstream 95812 11684835 ~ 11705835 (-) False wu:fb63a08
XM_026925335.2 mRNA upstream 262004 12063866 ~ 12363593 (-) False LOC113533285
XM_026925333.2 mRNA upstream 262004 12063866 ~ 12363593 (-) True LOC113533285
XM_026925363.2 mRNA upstream 634841 12436703 ~ 12523017 (-) True gpc1b
XM_026925637.2 mRNA upstream 833195 12635057 ~ 12722764 (-) False gpc5c
XM_026925636.2 mRNA upstream 833195 12635057 ~ 12722763 (-) True gpc5c
trnaw-cca_17 other downstream 253208 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 1273397 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 2828435 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 2847537 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 2915938 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 2930050 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 3425610 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 3885396 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 3885396 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 4555712 16357574 ~ 16367004 (-) True G321462

Expression Profile