Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU378001 |
| length | 689 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 3 |
| gene id | G319170 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 12765055 ~ 12803019 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004580307.1 | lncRNA | upstream | 9371 | 12761836 ~ 12763727 (+) | True | LOC117599962 |
| XR_004580306.1 | lncRNA | upstream | 9371 | 12761836 ~ 12763727 (+) | False | LOC117599962 |
| TU377905 | lncRNA | upstream | 145208 | 12627675 ~ 12627890 (+) | True | G319087 |
| XR_004580339.1 | lncRNA | upstream | 147344 | 12622299 ~ 12625754 (+) | True | LOC117599992 |
| XR_004580336.1 | lncRNA | upstream | 200691 | 12559513 ~ 12572407 (+) | True | LOC117599989 |
| TU378034 | lncRNA | downstream | 26289 | 12805522 ~ 12805732 (+) | True | G319198 |
| TU378126 | lncRNA | downstream | 243094 | 13022327 ~ 13023135 (+) | True | G319276 |
| TU378137 | lncRNA | downstream | 257789 | 13037022 ~ 13037736 (+) | True | G319286 |
| TU378165 | lncRNA | downstream | 308030 | 13087263 ~ 13087475 (+) | True | G319314 |
| TU378169 | lncRNA | downstream | 323114 | 13102347 ~ 13102608 (+) | True | G319318 |
| XM_034297705.1 | mRNA | upstream | 344567 | 12416510 ~ 12428531 (+) | True | LOC113533522 |
| XM_026925818.2 | mRNA | upstream | 1150253 | 11596699 ~ 11622845 (+) | False | pax3a |
| XM_026925819.2 | mRNA | upstream | 1150253 | 11596700 ~ 11622845 (+) | True | pax3a |
| XM_026925817.2 | mRNA | upstream | 1150253 | 11596700 ~ 11622845 (+) | False | pax3a |
| XM_026925732.2 | mRNA | upstream | 1228373 | 11535133 ~ 11544725 (+) | True | snorc |
| XM_034314599.1 | mRNA | downstream | 3304 | 12782537 ~ 12796824 (+) | False | LOC113533470 |
| XM_034314598.1 | mRNA | downstream | 12902 | 12792135 ~ 12796824 (+) | True | LOC113533470 |
| XM_026924981.2 | mRNA | downstream | 189081 | 12968314 ~ 12982849 (+) | True | LOC113533117 |
| XM_026925860.2 | mRNA | downstream | 225561 | 13004794 ~ 13014554 (+) | True | abhd17aa |
| XM_026925861.2 | mRNA | downstream | 226546 | 13005779 ~ 13014554 (+) | False | abhd17aa |
| TU378000 | other | upstream | 231 | 12765055 ~ 12772867 (+) | False | G319170 |
| trnag-ccc_6 | other | upstream | 1200201 | 11572827 ~ 11572897 (+) | True | trnag-ccc_6 |
| trnai-aau_17 | other | upstream | 1223910 | 11549115 ~ 11549188 (+) | True | trnai-aau_17 |
| trnap-agg_14 | other | upstream | 1224919 | 11548108 ~ 11548179 (+) | True | trnap-agg_14 |
| TU377149 | other | upstream | 1303599 | 11467299 ~ 11469499 (+) | True | G318439 |
| XR_004580321.1 | other | downstream | 1058200 | 13837433 ~ 13895665 (+) | False | LOC113533270 |
| XR_003403405.2 | other | downstream | 1058200 | 13837433 ~ 13895665 (+) | False | LOC113533270 |
| TU379509 | other | downstream | 2048032 | 14827265 ~ 14828771 (+) | False | ly97.3 |
| TU380255 | other | downstream | 3089783 | 15869016 ~ 15870995 (+) | True | G321088 |
| TU380359 | other | downstream | 3150719 | 15929952 ~ 15936768 (+) | False | gpx4b |
