RNA id: TU378012


Basic Information

Item Value
RNA id TU378012
length 413
lncRNA type sense_over
GC content 0.30
exon number 2
gene id G319178
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12754768 ~ 12779226 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATACTGTACATGCTTCATTTCTAAAGGAATCTGTATTGAATCAGTAGGTTTCTAAAAACAAatgcttctttaaaaaaaaaaaaaaaaatttatttgatCAGAAAATGGctcaaaacatttataaaacacacacacacacacacacacacacacacacactgattcttgtacagaaataaaaaactaaaaagaaattaattaaaatgattgcttgttttaaaataaatttaaaaaatggcatgTGGCATTCtggcatttttgttttcattctgaAATTCCAGCAAAGTTTCTTTTCTCCTTGTTAAACTCCTCTGCTTTCAAGCTCAATCACAAAGCCACAAGACATGTTCATGCCAACCAAACCTAATGGAGCaaatctgaatttgattatAGATAAacagtacataaaatg

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377987 lncRNA downstream 105882 12633893 ~ 12648886 (-) True G319163
TU377875 lncRNA downstream 170679 12583865 ~ 12584089 (-) True G319059
TU377454 lncRNA downstream 952906 11801647 ~ 11801862 (-) True G318660
TU377432 lncRNA downstream 1061434 11689489 ~ 11693334 (-) True G318639
XR_004580347.1 lncRNA downstream 1122847 11629570 ~ 11631921 (-) True LOC117599995
TU378307 lncRNA upstream 32089 12811315 ~ 12856578 (-) True G319429
TU378345 lncRNA upstream 129253 12908479 ~ 12915491 (-) False LOC113533649
TU378362 lncRNA upstream 210075 12989301 ~ 13021880 (-) True G319467
TU378376 lncRNA upstream 249883 13029109 ~ 13029704 (-) True G319474
TU378398 lncRNA upstream 290073 13069299 ~ 13069522 (-) True G319496
XM_034297734.1 mRNA downstream 516 12752650 ~ 12754252 (-) True LOC113533469
XM_034297706.1 mRNA downstream 28274 12724934 ~ 12726494 (-) True LOC117595730
XM_026925637.2 mRNA downstream 32004 12635057 ~ 12722764 (-) False gpc5c
XM_026925636.2 mRNA downstream 32005 12635057 ~ 12722763 (-) True gpc5c
XM_026925363.2 mRNA downstream 231751 12436703 ~ 12523017 (-) True gpc1b
XM_034314883.1 mRNA upstream 40845 12820071 ~ 12832529 (-) False LOC113533584
XM_026925813.2 mRNA upstream 42001 12821227 ~ 12832529 (-) True LOC113533584
XM_034314884.1 mRNA upstream 42001 12821227 ~ 12831523 (-) False LOC113533584
XM_034297708.1 mRNA upstream 55448 12834674 ~ 12840013 (-) True LOC113533473
XM_034314674.1 mRNA upstream 64854 12844080 ~ 12905436 (-) False svilb
trnaw-cca_17 other downstream 1206329 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2226518 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 3781556 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 3800658 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 3869059 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1952686 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2448246 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2908032 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2908032 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3578348 16357574 ~ 16367004 (-) True G321462

Expression Profile