RNA id: TU378126


Basic Information

Item Value
RNA id TU378126
length 809
lncRNA type intronic
GC content 0.40
exon number 1
gene id G319276
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13022327 ~ 13023135 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAAATGGAAGATTCATCATATCTCTTTCAGTCTAACAGAATCACAGAGCACACTCTGACCAGGAAATAGGAATCAGACATTGCTCCAAAAAAAAGCAGTACACTGCCTAAACGCCTAATCAGTCTTACATTGCCTATTAAGTATAAAGTGTAATCAAATCCTCACATTTACACCCTGTTCTGCAGCACAGAGTACTCCGTTTATGTTGAGGGCTTTCACATTTGAGACTGGCATATTAGCTGCTCCAACCTTAGCGAAGGTGTTATGTCAACTCGAGCAGGCCAGTAATGTTGCGTTTAACGCTGACGCCCTGTCTTCAGTTCTCTTTTCATCAGCACTCGGtctctttgttctctctctgtgtctttctatctctctggcACTCTGTAGCTCCTTCTCTGGCTTGTAGGATTCACAGGCATAAAGCTGTAAGTCAGCAAAGTTAAAAAAGAGTCCATATTGTTTCATTAAACAGCTGAATGAGAGAAATAAGTATGGATAGAAATCCTTTTCCTCAACAGAAAGCTACTGATCTAGTGTAAAgtaggggagaaaaaaaacacatcctgaCTTATTGATGCTGTCCATCAGGCTCATTAGTCTGGAGCTGAAGCTATGTATAACACTGTCACCTTTCAGCCTATAGCAGCCTTCTGTCATTCAAATCCTTCACATTCTGCCTTGCAACAGTACATATTCATTGCTGTATTTCCAATTAGCCAGGCAGTTTTCCGTTTATTACATACGGATACAGAATTTGTGGTATCAATTGATATCTGTTCATTTTGACACTGTTGTGAATGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378034 lncRNA upstream 216595 12805522 ~ 12805732 (+) True G319198
TU378003 lncRNA upstream 219308 12765055 ~ 12803019 (+) True G319170
TU377999 lncRNA upstream 230988 12775439 ~ 12791339 (+) False G319170
TU378001 lncRNA upstream 243094 12773098 ~ 12779233 (+) False G319170
XR_004580307.1 lncRNA upstream 258600 12761836 ~ 12763727 (+) True LOC117599962
TU378137 lncRNA downstream 13887 13037022 ~ 13037736 (+) True G319286
TU378165 lncRNA downstream 64128 13087263 ~ 13087475 (+) True G319314
TU378169 lncRNA downstream 79212 13102347 ~ 13102608 (+) True G319318
TU378181 lncRNA downstream 117139 13140274 ~ 13140482 (+) True G319330
TU378185 lncRNA downstream 125517 13148652 ~ 13148862 (+) True G319334
XM_026925860.2 mRNA upstream 7773 13004794 ~ 13014554 (+) True abhd17aa
XM_026925861.2 mRNA upstream 7773 13005779 ~ 13014554 (+) False abhd17aa
XM_026924981.2 mRNA upstream 39478 12968314 ~ 12982849 (+) True LOC113533117
XM_034314599.1 mRNA upstream 225503 12782537 ~ 12796824 (+) False LOC113533470
XM_034314598.1 mRNA upstream 225503 12792135 ~ 12796824 (+) True LOC113533470
XM_034297753.1 mRNA downstream 41360 13064495 ~ 13154527 (+) False sema6ba
XM_034297749.1 mRNA downstream 62345 13085480 ~ 13154527 (+) False sema6ba
XM_034297750.1 mRNA downstream 62469 13085604 ~ 13154527 (+) False sema6ba
XM_026925873.2 mRNA downstream 162796 13185931 ~ 13216057 (+) True rorcb
XM_026925322.2 mRNA downstream 194355 13217490 ~ 13241937 (+) True sh3gl1a
TU378000 other upstream 249460 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 1449430 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1473139 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1474148 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1552828 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 814298 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 814298 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1804130 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2845881 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2906817 15929952 ~ 15936768 (+) False gpx4b

Expression Profile