RNA id: XM_026925768.2


Basic Information

Item Value
RNA id XM_026925768.2
length 3501
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC113533556
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13665181 ~ 13680110 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCAATACACTCAGATATTTACAGAGGCTTACAGCCTATCCTGTGAATGTATCCACCACACCAAAGGAGATGCAGTGAGGGCATGCAAAGCTCTTCTTACTCACTGAGATGAATGATCTGCCTTTTGCTTTCTGTGTGGTGAATTCCTGCCTCAGATTCCTTTTTAAGTCCAAACCCATAAAAGCGAGGAATCATCATTTACCTGCCTAAGAGATACCCAGGACGCCCGGATTCATACACGCTCTACTGCTTTAAAACAGACAATTTACATGCTGAAAAAGATTAGAAAATTTCACTCTGCTAGCCCTGGATGTGCCTATGCTGAAGGATGTGGAAGATCCTAGATTTCCTCCAGGGTATCCTGACTCATATGAATGATGTAAGCACTCAAGAAAAGTCTGGAAACGGCGTTACCATGACAAGGAAGCTTCAGTAGTAAACTGTGTCTACCATTTATACTGCATCCTGACAACCCAACCCTTCCCAACCCAACCCAAACCAGCCCAGACGAGCCCAGCTTAGTCAGGgggttccttccttccttccagaATACATGGAGGTAAAAGGCGCAGGGGAAGCATGATCTATGGTCCCCAATCCTGGCTTACGGAACAAAATGAGGGATTTCCCCTCCCAACCTCTTCCCTGAGGTCAACCCAACACAACGCCACCCTGATAAGTCCGACTTAGCGGGGCACTCGAGTTTCAATGCTCCACGCCGTTCTAAGATGAAGTTATGGAAAAAGGCCATTTTTGCCTTTACACTACTTagtgctgctctctctctcctgctcatcATAACAATGATATCTGCTGGGTCCATCATCCCCTGGGCCTCAGCTATGTCTGTACATCCTTCAACAATAgcaccatcaccaccattatcaacatcatcatcttcacccATGGTGACCAGTCGTCGGCGGGTGGCCAGAGCATCTGAGGACATTGGTTCCCTCCTATCTGAGTTTTCCTACCTGTTTCAGAGCTTCACTGAGGGTGAGCTGCAGAGGGTCATCAGGTCACTTGTGGACAGGAAAGTTGGGAGAAGGACCAAGCGGGCGAAAAGCGCAGAGGCATGCTCATTGCACCAGGTGGTGCTAACAGTGAGCGAGCTGGGCCTGGGCTATGAAAGCGATGAGACAGTGCGCTTCCGTTACTGCAGAGGGAAGTGCAATAGACGCCTCAGCAACTATGACATGGTGCTGAAAAACGTGATCCTGAGCAAGGCACCCGAGAAAGACATAACCACTAATGGGGGCACGGCTAAGACAGAGAGGGCGCCCTACAGCCGCTGCTGCCGGCCCACCAAATACGAGAACATGTCATTCTTTGACAATAAGGCAAAGTTCTTCACCATTCAGGACGTGTCAGCCAGAAAGTGCGGCTGTGTGTGACACTGCAGGGTTTTTTCTGAGATGATTGTAGCAAATGAGGCCACCACAGTCATGGGATTATCTAAGCGATtaggtgtgtgtatggatggGGGCTTCAGAAAGAGGCTAGAATCAAATAGGTGGAAGTGGAAGCTGAACTCACTTGGAGAATCCATGCTGAATCCATGCATTTCATAATCCAAGCCACAGGCTAGAAGGTTGTGTTTGACCCTCTGGCAGTGCAGAAGGTAGGAAGTTTTGTGATTATGCTTTTAAGGGTTTCTGCAGAGTCTAATGCAGTTTTGagtttgaaagaaaaaagatgctTTAATGATTTGATGGCATGTGAAGTAGCAACCTTCAGTGCTAAGACACAACACTGGCCTTTTTCCTGAAGACATGAAACTGTTACCGAGTGGCAACTGCAACAGTGAAAATCCAGAATAAGCAATTCCCATATGGACTGAAGCAGTAtagaaaagtattttttttggtaacaaaTTCTATCTGTATATTCAACTATGAAGTTATCCACAGCTACCTcatttgtatttggttacagAAATATGCATCACACCAATCTGCTTGTTGTCAACTATTCATtgatacaaacatttaaaaatacagtcttCTCAGGTCAAATACTGTAAAGAACAGCATGCACTGTTACTTGAAGTGAAAACCCAGCAACTTACACCCTCATTTCATTTGCTCTTGTCAAGAGTCCAACTTCTCTTAAGTTCATGTCATCCCCAATCCAAATACAGAAttggatgtctttttttttaaaagacgtGTCTGACTTTCATGTAGTAGGTCATGAACACTGTGATGTCTGAGACACTTCtgttaatgttataaaaataagtTGTTTGTATTATCTGTCTTATTGATTCTGACATATTCAACTATCAATCAAATGTGCTGCTTTTTATGGACTGTTGTTACCTGAAAGTGTGTGGTTCACTTATACCTTAAAGGTTTAATCTGCTCATGATTCTTAAAGATTATGCTCTAGTACATCCGAGGGGTTAAGTGAGACTTGTGCCTGTTGGATTGGGTCACATTTTTAGCCCACTGTACACAGCATTAACAACTAATTCCTCTTTAAGTCAAAGCAGCCATAAATAACCAAACAGAACAGTTAGGTAACCTCCACATCTACTTTTAGAGTTTCTCTCTGTacgattttttttccccctgcagGTTGCTGGAAGGTTTGTTAAATTATATACAGGAGGTAATTAAGCACAGACAGATTGTGCCTGAATTATATACAGAGCTATCAAGCTCTAAACACAGCCTGTCATAAAATCTAATGGACTTACTGTGAACACAAGGCAATAGCAGCTGAAGGAACATGCAGCCTCGTAGTTGCACCAGAGACAGGCAGATTTACctacaacacaacaaaaaagccACACTGAAAAAGTCTGAAGGTGTCAACTGATGGAAAAGAAATTAACTGTACCTTACACTTCTTTTAAAGTGATGATTTAAAGATCATCAGTGGAGGCTTTTTACCATGAGCTAATCagattcatatttttataaatatatttataaattcgCAAATGAGATATTGCAAATATTATGGATTCTCCCAAACTAATCATTAAAGGAACTGCTACAGTTCAGAGGCATAAGATGTAAACTCTACTTCATGGGGAATGTAATGTAACAGGATTTCAATTCACGTTTATCATATTGCAACTCATAGATAATACCATGTAtgttaatatattcatattttatttttctttcaaatactGTATGTCTCAAAAACAATGGTTTCAAGTGCTTTTTCAGAGGGTgatactttgttttttttgtgttaattcaGTCCATTACTGTTGGAATGGACTGATTCTTAGCATAAAGTGTAGGACTGTATTTTGTTTCATATCAATCTGTGTACCTCTGTGTAAAGATGACCTGAAAGAGGCAGTACTATGTGTGTACAGATAGCGTCTCCCCATGTTACCAATTTACAGATTTGGCAGCGTTGGATCTTTTTCATACCAACAGCAGAAATGTTGATGCAGTGCATCTTTGATGTGAATAATCGATATTTATTGGACAGtggtgtgtatatttatttagataCTTTACTCGAAAGGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378702 lncRNA downstream 35724 13629247 ~ 13629457 (-) True G319766
TU378700 lncRNA downstream 49438 13612520 ~ 13615743 (-) True ccl25a
TU378684 lncRNA downstream 77650 13587091 ~ 13587531 (-) True G319754
TU378597 lncRNA downstream 236218 13428011 ~ 13428963 (-) True G319674
TU378596 lncRNA downstream 239229 13422351 ~ 13425952 (-) True G319673
TU378866 lncRNA upstream 151745 13831855 ~ 13834798 (-) True G319906
TU378946 lncRNA upstream 260501 13940611 ~ 13945349 (-) True G319974
TU378947 lncRNA upstream 268198 13948308 ~ 13949723 (-) True G319975
TU378970 lncRNA upstream 329799 14009909 ~ 14010188 (-) False G319995
TU378973 lncRNA upstream 329799 14009909 ~ 14010528 (-) True G319995
XM_026925603.2 mRNA downstream 4001 13658694 ~ 13661180 (-) False capsla
XM_026925602.2 mRNA downstream 4001 13658712 ~ 13661180 (-) True capsla
XM_034297717.1 mRNA downstream 49658 13612516 ~ 13615523 (-) False ccl25a
XM_026925153.2 mRNA downstream 65497 13594607 ~ 13599684 (-) True im:7138239
XM_026925152.2 mRNA downstream 72515 13589569 ~ 13592666 (-) True admp
XM_026925917.2 mRNA upstream 13293 13693403 ~ 13703418 (-) False abhd8a
XM_026925918.2 mRNA upstream 13293 13693403 ~ 13703418 (-) False abhd8a
XM_034297789.1 mRNA upstream 13293 13693403 ~ 13703418 (-) True abhd8a
XM_034297791.1 mRNA upstream 13293 13693403 ~ 13703413 (-) False abhd8a
XM_034297790.1 mRNA upstream 13293 13693403 ~ 13698964 (-) False abhd8a
trnaw-cca_17 other downstream 2116742 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 3136931 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 4691969 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 4711071 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 4779472 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1051802 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 1547362 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2007148 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2007148 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 2677464 16357574 ~ 16367004 (-) True G321462

Expression Profile