RNA id: TU378986


Basic Information

Item Value
RNA id TU378986
length 214
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G320003
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14017941 ~ 14018154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATGTTTATATAAGTCATgtttaaataagaaagaaagaaagaaagaaagaatgaaaaatcaGGGTTGCCATTAAAATTGTGCAGCATGACTATTTGTTCTTATTGATTGAAAATGCTAAAATGAAGTGGATTAAATCAATATCACTCAGTGTTGATTACGTGATGGGAACAATGTTACATGAACACattactgtttaaaataaatacgaCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576915.1 lncRNA upstream 98795 13911571 ~ 13919146 (+) True LOC117595739
XR_004576916.1 lncRNA upstream 98795 13911571 ~ 13919146 (+) False LOC117595739
XR_004576917.1 lncRNA upstream 107661 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA upstream 108306 13908863 ~ 13909635 (+) True G319886
TU378818 lncRNA upstream 123500 13856965 ~ 13894441 (+) True G319867
TU378987 lncRNA downstream 675 14018829 ~ 14019036 (+) True G320004
TU378998 lncRNA downstream 62095 14080249 ~ 14126913 (+) False zmp:0000000521
TU378999 lncRNA downstream 62095 14080249 ~ 14127006 (+) False zmp:0000000521
TU379021 lncRNA downstream 119508 14137662 ~ 14140523 (+) True G320032
TU379022 lncRNA downstream 122526 14140680 ~ 14186212 (+) True G320033
XM_026925567.2 mRNA upstream 2570 14006357 ~ 14015371 (+) True rnf126
XM_026925092.2 mRNA upstream 14241 13988603 ~ 14003700 (+) True twsg1a
XM_034314762.1 mRNA upstream 32885 13949726 ~ 13985056 (+) True ankrd12
XM_034314763.1 mRNA upstream 32885 13949726 ~ 13985056 (+) False ankrd12
XM_026925273.2 mRNA upstream 70149 13932646 ~ 13947792 (+) True ndufv2
XM_026925245.2 mRNA downstream 96620 14114774 ~ 14127012 (+) True zmp:0000000521
XM_026925244.2 mRNA downstream 96623 14114777 ~ 14127012 (+) False zmp:0000000521
XM_026925246.2 mRNA downstream 96648 14114802 ~ 14127012 (+) False zmp:0000000521
XM_026925679.2 mRNA downstream 326440 14344594 ~ 14372193 (+) True sirt6
XM_034314854.1 mRNA downstream 420209 14438363 ~ 14450439 (+) True ralbp1
XR_004580321.1 other upstream 122276 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 122276 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1245074 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2445044 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2468753 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 809111 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1850862 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 1911798 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 2082379 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 2093882 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile