RNA id: TU378987


Basic Information

Item Value
RNA id TU378987
length 208
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G320004
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14018829 ~ 14019036 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTATTTTGCTTAGCAATATGCCAACCGTTACATTATGTTTTCAGGATGTCTGTGCGTCCAAACAAGATTCTTATTAGCACGATATCTCAAAAATGAGTGAATGTTTGTGGGATGTATATGGAATTATTCCTggaaccagcagatgaactgatgaaGTCCTTCAGAACAGGGTCAagatcacagcaaggtcaaatgtctaaaatac

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378986 lncRNA upstream 675 14017941 ~ 14018154 (+) True G320003
XR_004576915.1 lncRNA upstream 99683 13911571 ~ 13919146 (+) True LOC117595739
XR_004576916.1 lncRNA upstream 99683 13911571 ~ 13919146 (+) False LOC117595739
XR_004576917.1 lncRNA upstream 108549 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA upstream 109194 13908863 ~ 13909635 (+) True G319886
TU378998 lncRNA downstream 61213 14080249 ~ 14126913 (+) False zmp:0000000521
TU378999 lncRNA downstream 61213 14080249 ~ 14127006 (+) False zmp:0000000521
TU379021 lncRNA downstream 118626 14137662 ~ 14140523 (+) True G320032
TU379022 lncRNA downstream 121644 14140680 ~ 14186212 (+) True G320033
TU379046 lncRNA downstream 169704 14188740 ~ 14189014 (+) True G320057
XM_026925567.2 mRNA upstream 3458 14006357 ~ 14015371 (+) True rnf126
XM_026925092.2 mRNA upstream 15129 13988603 ~ 14003700 (+) True twsg1a
XM_034314762.1 mRNA upstream 33773 13949726 ~ 13985056 (+) True ankrd12
XM_034314763.1 mRNA upstream 33773 13949726 ~ 13985056 (+) False ankrd12
XM_026925273.2 mRNA upstream 71037 13932646 ~ 13947792 (+) True ndufv2
XM_026925245.2 mRNA downstream 95738 14114774 ~ 14127012 (+) True zmp:0000000521
XM_026925244.2 mRNA downstream 95741 14114777 ~ 14127012 (+) False zmp:0000000521
XM_026925246.2 mRNA downstream 95766 14114802 ~ 14127012 (+) False zmp:0000000521
XM_026925679.2 mRNA downstream 325558 14344594 ~ 14372193 (+) True sirt6
XM_034314854.1 mRNA downstream 419327 14438363 ~ 14450439 (+) True ralbp1
XR_004580321.1 other upstream 123164 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 123164 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1245962 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2445932 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2469641 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 808229 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1849980 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 1910916 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 2081497 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 2093000 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile