RNA id: TU379046


Basic Information

Item Value
RNA id TU379046
length 275
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G320057
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14188740 ~ 14189014 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAGAAAGGAACCTCTTCTCACCTTTGCTGTTTCCGTCAGGACCCCTCAATACGGTGCACTCTTCAATCACTCCATAAGGCTCGAAAAGGCGGTACACATCCTCCTCCGTCTGCTGCTTGTTCAGCATGCCAACAAACAGCTTCCTGTCCTCTGAAACACAACAGAGTAAAACATGTCTGTTATGATTTCTGTCATATCACTTCCGCCTTCTGGTcatacatttacagtacattacatttcTTCATTTAGCTGTCTAAGCATCTAGGTGTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379022 lncRNA upstream 2528 14140680 ~ 14186212 (+) True G320033
TU379021 lncRNA upstream 48217 14137662 ~ 14140523 (+) True G320032
TU378999 lncRNA upstream 61734 14080249 ~ 14127006 (+) False zmp:0000000521
TU378998 lncRNA upstream 61827 14080249 ~ 14126913 (+) False zmp:0000000521
TU378987 lncRNA upstream 169704 14018829 ~ 14019036 (+) True G320004
TU379059 lncRNA downstream 17841 14206855 ~ 14207067 (+) True G320070
TU379084 lncRNA downstream 51968 14240982 ~ 14241203 (+) True G320095
TU379088 lncRNA downstream 54938 14243952 ~ 14244154 (+) True G320099
TU379139 lncRNA downstream 123238 14312252 ~ 14312886 (+) True G320150
TU379138 lncRNA downstream 126047 14315061 ~ 14315318 (+) True G320149
XM_026925245.2 mRNA upstream 61728 14114774 ~ 14127012 (+) True zmp:0000000521
XM_026925244.2 mRNA upstream 61728 14114777 ~ 14127012 (+) False zmp:0000000521
XM_026925246.2 mRNA upstream 61728 14114802 ~ 14127012 (+) False zmp:0000000521
XM_026925567.2 mRNA upstream 173369 14006357 ~ 14015371 (+) True rnf126
XM_026925092.2 mRNA upstream 185040 13988603 ~ 14003700 (+) True twsg1a
XM_026925679.2 mRNA downstream 155580 14344594 ~ 14372193 (+) True sirt6
XM_034314854.1 mRNA downstream 249349 14438363 ~ 14450439 (+) True ralbp1
XM_034314855.1 mRNA downstream 249382 14438396 ~ 14450439 (+) False ralbp1
XM_026925359.2 mRNA downstream 263179 14452193 ~ 14466753 (+) True rab31
XM_026925176.2 mRNA downstream 292662 14481676 ~ 14487383 (+) True LOC113533212
XR_004580321.1 other upstream 293075 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 293075 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1415873 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2615843 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2639552 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 638251 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1680002 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 1740938 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 1911519 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 1923022 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile