RNA id: TU379088


Basic Information

Item Value
RNA id TU379088
length 203
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G320099
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14243952 ~ 14244154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAAATGCTCTCTGCACTGGCTGATTTACAAATAGCATATTTGTACATTATCTTATGATCCCTTGTAGTTGCAGTATGTGCCATTATAAACGGTGTATTTCAGCAAAGTGGCCATGTCCAGTGATCACAGACCACACAATCTTGCATTCAAATCATTATCCTTCTCAACATATAATCCGAGCTTTTACTCTGCACATAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379084 lncRNA upstream 2749 14240982 ~ 14241203 (+) True G320095
TU379059 lncRNA upstream 36885 14206855 ~ 14207067 (+) True G320070
TU379046 lncRNA upstream 54938 14188740 ~ 14189014 (+) True G320057
TU379022 lncRNA upstream 57740 14140680 ~ 14186212 (+) True G320033
TU379021 lncRNA upstream 103429 14137662 ~ 14140523 (+) True G320032
TU379139 lncRNA downstream 68098 14312252 ~ 14312886 (+) True G320150
TU379138 lncRNA downstream 70907 14315061 ~ 14315318 (+) True G320149
TU379170 lncRNA downstream 142084 14386238 ~ 14466698 (+) False rab31
XR_004576913.1 lncRNA downstream 160825 14404979 ~ 14426298 (+) True LOC117595736
TU379210 lncRNA downstream 194562 14438716 ~ 14453951 (+) True G320210
XM_026925245.2 mRNA upstream 116940 14114774 ~ 14127012 (+) True zmp:0000000521
XM_026925244.2 mRNA upstream 116940 14114777 ~ 14127012 (+) False zmp:0000000521
XM_026925246.2 mRNA upstream 116940 14114802 ~ 14127012 (+) False zmp:0000000521
XM_026925567.2 mRNA upstream 228581 14006357 ~ 14015371 (+) True rnf126
XM_026925092.2 mRNA upstream 240252 13988603 ~ 14003700 (+) True twsg1a
XM_026925679.2 mRNA downstream 100440 14344594 ~ 14372193 (+) True sirt6
XM_034314854.1 mRNA downstream 194209 14438363 ~ 14450439 (+) True ralbp1
XM_034314855.1 mRNA downstream 194242 14438396 ~ 14450439 (+) False ralbp1
XM_026925359.2 mRNA downstream 208039 14452193 ~ 14466753 (+) True rab31
XM_026925176.2 mRNA downstream 237522 14481676 ~ 14487383 (+) True LOC113533212
XR_004580321.1 other upstream 348287 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 348287 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1471085 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2671055 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2694764 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 583111 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1624862 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 1685798 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 1856379 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 1867882 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile