RNA id: TU379138


Basic Information

Item Value
RNA id TU379138
length 258
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G320149
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14315061 ~ 14315318 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAAATTCATCCTTGGGGATTGCCCTTCGCCCTCCCTGTCTGCTTTCACTTGCCGCTCTTTCATTTCCGATGAAAAAATAATGAGCTTATATCCCACATGTCCATTAATATCTTGTATGAATGCAGAATGAGCACTGTGACGTCtcgctgcatgtgtgtgtgtgtctttctcacTGTTTCGCTCTCAGGTTTTTGGCTGACCCCAGCTCTCTGGCGCGCCACATTGAGGAAGATGTTTGAGAGATGTCAGAGTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379139 lncRNA upstream 2175 14312252 ~ 14312886 (+) True G320150
TU379088 lncRNA upstream 70907 14243952 ~ 14244154 (+) True G320099
TU379084 lncRNA upstream 73858 14240982 ~ 14241203 (+) True G320095
TU379059 lncRNA upstream 107994 14206855 ~ 14207067 (+) True G320070
TU379046 lncRNA upstream 126047 14188740 ~ 14189014 (+) True G320057
TU379170 lncRNA downstream 70920 14386238 ~ 14466698 (+) False rab31
XR_004576913.1 lncRNA downstream 89661 14404979 ~ 14426298 (+) True LOC117595736
TU379210 lncRNA downstream 123398 14438716 ~ 14453951 (+) True G320210
TU379211 lncRNA downstream 140065 14455383 ~ 14456457 (+) True G320211
TU379212 lncRNA downstream 143354 14458672 ~ 14459009 (+) True G320212
XM_026925245.2 mRNA upstream 188049 14114774 ~ 14127012 (+) True zmp:0000000521
XM_026925244.2 mRNA upstream 188049 14114777 ~ 14127012 (+) False zmp:0000000521
XM_026925246.2 mRNA upstream 188049 14114802 ~ 14127012 (+) False zmp:0000000521
XM_026925567.2 mRNA upstream 299690 14006357 ~ 14015371 (+) True rnf126
XM_026925092.2 mRNA upstream 311361 13988603 ~ 14003700 (+) True twsg1a
XM_026925679.2 mRNA downstream 29276 14344594 ~ 14372193 (+) True sirt6
XM_034314854.1 mRNA downstream 123045 14438363 ~ 14450439 (+) True ralbp1
XM_034314855.1 mRNA downstream 123078 14438396 ~ 14450439 (+) False ralbp1
XM_026925359.2 mRNA downstream 136875 14452193 ~ 14466753 (+) True rab31
XM_026925176.2 mRNA downstream 166358 14481676 ~ 14487383 (+) True LOC113533212
XR_004580321.1 other upstream 419396 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 419396 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1542194 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2742164 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2765873 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 511947 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1553698 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 1614634 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 1785215 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 1796718 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile