RNA id: TU379422


Basic Information

Item Value
RNA id TU379422
length 2901
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G320386
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14613999 ~ 14671669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGagtaattgatttttattaatctGCAGTAGTTAAAGacataaaaacttaaaaatacatatagaaaaatatttgatgtgtgcaatatttttaaGCCATACAATCAAAAGCTTTGGGAAAGTCAGTGTGCAGGCCACAGTATTAGACAGAACAACATTAAAACTCACCTGCTACAGACACTTGGCTTCATgcatccacaaacacacaaattcaGAGGCCTAATTAGAAATTAGTGGATAGAATTAAAACTTTATCCAGAGGATTCACTcacttaaaaaatatacatatatatataaactgtgcCATGACCATACATTATGTAAATACAGCTTTGGGatcagacagatacagacagatcGGTACACATTAGAAATATTTGTATTCGTTTCAGCCAGTTCATCCATTATTTATCCAGCATTTCTGATCTGAAGGTCACACTAACGGATCTTTTTCACCAGTGTTTATTcgtttgtatttcattttcactgtatCACTTGAAATGGTCAGGTTTAGGGGTTATCTTGGTCTTGGGTTTGGAGGTATTctcacattttaatgaaaatccCAAGGGCTTAGAAAAGAGATTACAAAATATACCAAAAACTGGTGTATTTTAGTACATATTAACTGAGAACTATAACTGAGAACTATAATGGGAATATCAGGGCTTGTGCAGGCAATagaacaatatatatattaaaaaaaagagattattCAAACATATTCAGTGATACTGCGCTGTTGCAAACTGTGTGAAAATGCAGGAATATGGTATGCATTTTGAATTTGTTCCACATTCAATttagtacacaaataaaataaaagatgctTTGCAGTAGGGAAGCTCTCCCCCGCATTGGGGCCTGCTCTATTTTAAGGCCTTTGGCTTTCAGCAGCTACACCAGAGGAACACAGTGAGGCTCTGTTTGTtggagaaaaagggaaaaaaatcaactcatGCTCAGTAAATATAGAGTGTATTAAAAATCTCGCAAACTAAGCAATGTTGCTGAAATGCACATCTCATAGTAGAGCTTGTTAGCATAAGTAATGTGCGTAatctgaatcagtgaatgtgAAACGACTTCACACGGAGTCATATTTCTGTAGACGGAATACATCATTGTGCAGCATATAGATCAATTTGCGATGTGAATAtattgtatgtaaaaaaaaattacagtaatttCATTATTAGTCATGTAAGAGTACAAAATGATACACAACTAATATTGAATACTTATTTTATACACGCAAACACTCATTTTTTGCACCATGGTTTTGCACAGGCTTAGAGAGCTACGACTTTGCTTAACAAGGTGAATGTCGTGTCCTAATCAGATGTGACTCCAATTTTTGACCCCAGTCTTGTGATTATGTGCTCTAATGCCCAACACGTGGTTCATATAAAAATGATGGCAATCACGTTCCAGGGAAAAGTTACTGGTATGAATTTTGTATCTAGGGCTAGATGAGATAGAGTTTACGTGCATAGACTGAGCACTGCCacgaagggggaaaaaaaatcatatgctatgaACATTAACAAATCCTAACCATGTGCCTTGGGCAGTTTTACAAGAGCTGAAGCTTTTTCTGCAGTGGGGATCTGTGCCAGACACACGTGAGATCTGTCATGAGGTCCACTCCCAAAGCATTCATACTAGAAATTTCTTGAACGCAACATCGCAGTACGTTACTAATCCAAATAAATTCTACTAGATTACACAAGATTACTGAAGACCAGTCTGTGCTGGCAGCAGTGAGGAAAAATGTTGCGTCCTTAAGCCTATTTTTCATCATCTtactcagttatttatttttttttacactttttaaaattacatctGTCCGTTATGAGATTATATGAACTCCTCTTGTCCCTAAATTcacataaacaatacaaaaaaaagcagtaggAAAAAGTTATAAGCTTGCAATATGCATTAGTTAGCTAGTGGTATTGGTGAAGTTAGATAAtatcatataatttttttaaaaaaatgtaaaaattagtCACATTATGCAGTCCACCTTGTGAATGTGATGgggatttttatatataagacACTACTGCCATTCACCAGGAGGGTCATAACTATAATCAACCACCACAGGATATACTTTCATTAAAAACGTCTTAaaactatgtttaaaaaaaaaaaaacggcaacTTGGCGTTACTCGTCACAATGCAGTGGATGAGGAACACATCTGAACTCTATCTCACACATTTTCAGTGGCACGGCTTCTTGAAATTCAACGGACCGACCCACGACCTTCCCCCACTTCACTCCTGAACTGATTTCTAACTCTTCAAATCACATGAAGTCGTTGCATTTTGATACAATTTAATTCTATTCATTGGAATCAAAAATATCAATTGATTGTATTTTGATTTGAGGATCATGTGCTTTAGAcctaaaaaaatgatttatgtaatcagtataaagtataaatacatcAGACTCTCTACAGAAAGGACAAAATATAGGGATACTATATGAtgccgtacacacacacacacacacacacacacacacacgcacaggCATATAAAGGAGAGATTATCCACGTGTGGAGGCGAGTCTGTAGTCAGTGCCACTCAGCTTTAGTGGCTACAGTAGCTGCACTGATGCCTCTGGGATGCAGATGTGGGGGAATTAGTGAGCAGCATTGCAGCCTGTCCAGtggttatatatatttatatacactttCTGGGTTTGGTGTGATGACAGTACACTGAAAGTCTCTCATACAGTCCCAGTAAAGCTGCAATGGTGATTCCTCTCTTGCTCGACTATCTGCAGGCTTGGTTTGTGCTCCGATTCGTCGGTCTCCGACATCTCGGGGTGCCGTTGGCGCGGAAGACGTTCCTTGAAAAAATCTGAGACGTATCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379412 lncRNA upstream 2213 14662662 ~ 14666508 (+) True tle2c
TU379395 lncRNA upstream 108108 14549223 ~ 14560613 (+) True G320371
TU379212 lncRNA upstream 209712 14458672 ~ 14459009 (+) True G320212
TU379211 lncRNA upstream 212264 14455383 ~ 14456457 (+) True G320211
TU379210 lncRNA upstream 214770 14438716 ~ 14453951 (+) True G320210
TU379658 lncRNA downstream 392088 15063757 ~ 15066365 (+) False LOC113533366
TU379693 lncRNA downstream 420252 15091921 ~ 15096332 (+) False LOC113533365
TU379908 lncRNA downstream 552202 15223871 ~ 15226072 (+) True G320797
TU379931 lncRNA downstream 577846 15249515 ~ 15253554 (+) False fcer1gl
TU379971 lncRNA downstream 630649 15302318 ~ 15302730 (+) False si:dkeyp-68b7.7
XM_026925874.2 mRNA upstream 4588 14637781 ~ 14664133 (+) False tle2c
XM_026925876.2 mRNA upstream 4588 14637781 ~ 14664133 (+) False tle2c
XM_026925875.2 mRNA upstream 5625 14637781 ~ 14663096 (+) False tle2c
XM_034314782.1 mRNA upstream 39872 14602769 ~ 14628849 (+) True chico
XM_034314783.1 mRNA upstream 39872 14602769 ~ 14628849 (+) False chico
XM_034314853.1 mRNA downstream 106553 14778222 ~ 14804806 (+) True scn12aa
XM_026925382.2 mRNA downstream 116740 14788409 ~ 14804806 (+) False scn12aa
XM_026925724.2 mRNA downstream 155573 14827242 ~ 14828778 (+) True ly97.3
XM_026925483.2 mRNA downstream 392052 15063721 ~ 15066371 (+) True LOC113533366
XM_026925481.2 mRNA downstream 410569 15082238 ~ 15101460 (+) False LOC113533365
XR_004580321.1 other upstream 773056 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 773056 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1895854 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3095824 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 3119533 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 155596 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1197347 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 1258283 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 1428864 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 1440367 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile