RNA id: XM_026925482.2


Basic Information

Item Value
RNA id XM_026925482.2
length 2376
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC113533365
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15082238 ~ 15101461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGGACTGAGTGTCTCTGGGCATCATTCACCTTATACTAAATCACTGCCAGGATGACTGACAGATCCATTGTCTAGCAGTCACAATGATAGCGACAGGCGGGCTCCTGAGGATCTCCCGGCGGCAGGATTCGCTGCGCACTAAGAACCGAGCGGAGAACAAGCGAAGAAGGAAAGCCAGGAAGAGGATGAAAAACAATGTGGTGGTGGTGAAGGGCAAGCTGAAGCTGTTCTCTGCATCTGGCCTGATTGCAGCACTCGGAGTGCTTGTCTTAATGGTGGGAATATCAATGGCTGTCCTGGGATACTGGCCCAAAGAGACCTCGGCTTACCCAAAAGTCTTACCAAGAGAGAAGCAGCCCATAAAACAGGCAACTGATTCCAAAAAAACCCTTCGGCTGGCATCAAACTTGACGAGCAATACCAAGCTCTGGATGAAGCATTGGAATAGCAGCGATGGTATGATTAATGCTACCAAGCCTAATTTCCGGCCTGTTGGATTTTTTGAAGGCCTGTTCTCCACTTATCTGTACTCCGACAACCTCAAAGTGTTTGGACCACTGGTTATGGGTATTGGTATCTTCCTTTTTATTTGCGCCAATGCCGTGCTCCATGAGAACCGTGACAAGAAGACCAAAATCATTGACCTGAGGGACATTTACTCTACGGTTATAGACATCCACAGTTTGCGGTCCAAAGGCCATGCCCCTCTTAACGGGCTGTTAGGCTGCACACAGTCCAAGGAAGGAGATCTTACATCAGCCACATATAAGACAGCCATGCCGTCAAGAGGCTCCTGGCCTTCTACTGTCTCATGTAAAGAAAAAGATTACAGGAGATCATCATTCGCCAGAAAGTTTAGCTGGTCTAGAGAAAGACAGTCACTTACTGAGACAATCTACACCATTTACAGAGATCAGAACAGGCTTAAAGAGGCAACACCTGCTCCCAAGGAGTGGGAGACACGCTCTATAGTCACTTCATCAGTTAATGCTTTCACATTACCTGTAATTAAACTCAACAACCATGAAATGGAAGCGAGAGAAGAGCGGGAGGGAGAGCGTCCTACACCAGGCAATCTGACAGAGAAACTGCAGCCAGAGTGCCAGGGCTCTGGATGCTCCGAAGAACTTCTCAGCACTGCCATACAAACCAAAGCTGAGGTATTGAGGGCAGGTTTGTCGGTATCTCGGGATTCCAAGCTCTCAGGTGATGTATCCAGTGTATGCCAGCAACAGCTGCAGCTGCCCAGTTCTGGGTTCAGGATCCTGGGCTCCCACCTGTCCCTGAATGCCCTTTCTGACCTGGGCACTGGACGGCACGAAGAAAGGTCACGCAGATTCAGCTGCCCGAGGCTGGACCGATTGGGCAGTAAGGGCTATATAAAACTGGCAGCACTAGGAGGAGACTCATTTGAAGCCCCAGATGGGGCACCAGAAACAGGTGTGGAGGGACCAGAGCAGACAGGAACACAGAGTTATGTTATGAATGCACACATATTTCCCAATAACTCCCTCACACAGCTGCACACAGAACCAACCATGTTGAACTCTCACACAACCGATGTAGATGTGGACTCAAAGACAAATCTCCAACTGGGAGAGCAGGTCTGAGCAAGTCTATATGCTCAGGCATATAAGTAAGATGTAGTCATTAACTGCTTAGGGTTCTTCTGTGGACAATTCACTTAGTTTGTAGCATAACAAAGACAAGATTTTATGCCGAAAACAACACTCATAAAAGTACatataagtatttaaaaagACTGGAGGTACAATCCAGCTTTTGAGGAGACCATCACTCACTTTTGTGCAGTATTTAGATAATAAGTCCAAGAGTAGAAACGAGTTGTTCTTGTGCCTTCCACTGATCTGTTAGGCTTATATGCTGTTCCTGTCCTGCATTGTGTCACCTATTAAGTAACTTTCCTTGTAATAATTATTGAACAATTGTCTTATTGATGTGTTTTCTCCAGATTCACCAACTTTTGTCACACAAATGaatctttcatttaaaatcaaagaCCTATTTTCGGTTGTTAGTCAAAGCTCCTGTATTTGTAATAGAAACACCATCTTGCTTTGCATATACAttgacaaaatataattatgCAACCTCATGAACTTTGTTTCATTGTACCTGGATATTGTTGTGCAATCAAACAGCAATAACTGCTAGAGATGAATTCTCAGGTTTCCCCGGGCTGGAAAATGATGAAGGCCAtaaatgaagtgttttttttcctatagaCTATTTTGTGGTTGAATGTATGTCAAGTTCATGCAAAATTGTTGCTGGTCAAGAGTCAGTAGATGAAATAAACCCATACAAATGAcagaattaatatttattgctgatttttttttcttcaattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379693 lncRNA upstream 2541 15091921 ~ 15096332 (+) False LOC113533365
TU379658 lncRNA upstream 32508 15063757 ~ 15066365 (+) False LOC113533366
TU379424 lncRNA upstream 427204 14613999 ~ 14671669 (+) False G320386
TU379908 lncRNA downstream 122410 15223871 ~ 15226072 (+) True G320797
TU379931 lncRNA downstream 148054 15249515 ~ 15253554 (+) False fcer1gl
TU379971 lncRNA downstream 200857 15302318 ~ 15302730 (+) False si:dkeyp-68b7.7
TU379974 lncRNA downstream 209143 15310604 ~ 15310809 (+) True G320843
TU379980 lncRNA downstream 239105 15340566 ~ 15341207 (+) True G320848
XM_026925483.2 mRNA upstream 32502 15063721 ~ 15066371 (+) True LOC113533366
XM_026925724.2 mRNA upstream 270095 14827242 ~ 14828778 (+) True ly97.3
XM_034314853.1 mRNA upstream 294067 14778222 ~ 14804806 (+) True scn12aa
XM_026925382.2 mRNA upstream 294067 14788409 ~ 14804806 (+) False scn12aa
XM_026925875.2 mRNA upstream 435777 14637781 ~ 14663096 (+) False tle2c
XM_034314832.1 mRNA downstream 17032 15118493 ~ 15139852 (+) True LOC113533364
XM_026925902.2 mRNA downstream 74314 15175775 ~ 15191239 (+) True LOC113533638
XM_026925903.2 mRNA downstream 74315 15175776 ~ 15191239 (+) False LOC113533638
XM_026925028.2 mRNA downstream 130086 15231547 ~ 15240528 (+) True ncstn
XM_026925039.2 mRNA downstream 140568 15242029 ~ 15248003 (+) False si:dkey-10o6.2
TU379509 other upstream 270102 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1203208 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1203208 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2326006 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3525976 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 767555 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 828491 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 999072 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 1010575 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 1029874 16131335 ~ 16132364 (+) True G321257

Expression Profile