RNA id: TU379908


Basic Information

Item Value
RNA id TU379908
length 2180
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G320797
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15223871 ~ 15226072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTATCaagcaaaatgaaacaaacatttatacattagCAATTCATGATTTAATAGAGTCTGCAGAGAAACAATTACAATGATGCCCAGTTTTGTTCTCAGTTTCTAGCTTTCCAGTGATGAAAAATACACACCATGAAACATATGATTACAGTACCAAAAGGACATATACTGTATTCCTGCCCAGTCCTGACAATTAGCTATAAATCCTATTCCTAATGGACGAAATCTCTCTCTACACTAAATTCCCCCAAAAATGAAGGCGTTAAATGGGTTTGGCTGCTACGACCTGACAGCACGTTTAATGAAAAGGGAGAGTACACGTTCTGCAGCCCAATCTAATGATAAATACAGTTACATGTGCATAATTATTATGGTTTTTATAAAGAGAAagcacaaaatataatataccaACATCGAAGCCAATGGATGTTCCATGCCATCCCAGTTTTATCTGGGGACTAAAATGCCACTGCTTTAACCCACTGATTTTTAAAGCCCTGAAAACACCAACCTCCACCTTGGCTCCCAATATCCACAGAAAATGAACTCTGCCTATGAACGAATGACGAATGGACATTTGATTTGATACCGCTTACACTGCATACGCTTCCTCTTCGTATTGCCTGATTGAGTATAGTTCTCATATTTTCTGCCAAGAAATAGGCAAGAAATGTGTATCTCCAGGGCTAGTCAGGGCACGTTGAGCTTATAAATGCTTGGTTAAGGCAAGTTTGTGACATGCTTGTCCATAATGATACGTTTTGCAGTCTGATGCTGTTGTCTGTAATCATGATTTTTACATCAGTGTAACAACTTCAGGGATATAACTGGCATCAGACAGCAGCACATTCTTTTTGGATTTGTATCGCAACACCAGCCTTTCACCTtaacagtaaacacaaaatcttttaaaattggTCCTTGTGGTAAAGTCATTgttaaaatgtgtcattttaaaattgttgtaAACTTTAAAATTTGTCCTTGATGTAGCGTTTCCCAAAAAATAGAAATACTTTGTGTAACCCTTGAATGCAGGGTTGACGGTTTGCACACAATTAATAACAGAAATGTAATTCATTGTACAGTAAATGTGGTCTACTACAGAGAAAAACAGCTGTATCAATGTACATAAATACGTACAAAGCTGATGAGTTATAAGAATCTTCCTAAAAGCATTTTTCCAGCAAAGTCTGCACTGTTTAGTTCATACAGCAGGAACTTTGAGATTAGCTGTAAGACACAGGTTGTGGTTAGTTACATTGGTGCCGGTAGCGACTGGCTCGTGTGGGGAAGCTCATGCCACACAGAGAGCAGCTGAAGCCACGCTCACCCGTGTGCGTTCGCATATGACCCTTCAGGCTGCTTTTCTGCGTGAAGCTCCTGCCACATGTCCCACAGCTGAAGGGCTTCTCTCCGGTATGCACGCGCTGATGCCGGTCCAGGTGGCTCAGACGGTCGAAACTCTTACCACAGAGAACGCACAGGAAGCGCCTCTCACGTCCATTCAAAATACGCCGCCTCCGAGGTAATGTGTCGTATGGAAAATCAGGCACCGCTGCAGTCTCTGTGGTCCTGAGACAGTCTGTGGTCGAGTTCTGATCTAAAGGTGACGCTGTGTTCGGGTCATAGGGCGCCTCTGGATTCAGATTGGACTCTTCTTCATCCAAGCAGGACgcatcctcttcctcctctttcacATGAATTTGGTTCACAGCAACACTTTTGGCCTTGGAGACCCCCCACGTGTGTAGGACTGTCGAGGTAGATTCTAACCGGCGTTGGTTTTGAGCTGAGGTTTGCTCGGTTATGCTAACGCAGTCAGACTCCATTGAGTCTTTCCTGAAACTTGAGTGTGCCTGAGCATCTTCCTCGTCCAGGACACTCTCAGATCCAGAGTGCCTAGGCTCGTCCAGCCGACAATCGGATAACACCTgatcttcatcctcctcctcttcctccccaTTCTTCTCATATAGCTCAGGTAGATCAGCTGGCTTCTTAGTTTGTCCTGCAGGGAAATTTCTAATCTTCTGATCTCCGTACGCTTGGTGCATGCTCTCTTCATCTGCGTTTATGAAGTGAGCTCCTTCTTGGCTCAGGTAGGACGAGTGTGAATTCGGTTCTTCTGTGTTTTGGTCAAAGTTGTGTGTGATCTGTTCTTCACAGTGAGTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379693 lncRNA upstream 127539 15091921 ~ 15096332 (+) False LOC113533365
TU379658 lncRNA upstream 157506 15063757 ~ 15066365 (+) False LOC113533366
TU379424 lncRNA upstream 552202 14613999 ~ 14671669 (+) False G320386
TU379931 lncRNA downstream 23443 15249515 ~ 15253554 (+) False fcer1gl
TU379971 lncRNA downstream 76246 15302318 ~ 15302730 (+) False si:dkeyp-68b7.7
TU379974 lncRNA downstream 84532 15310604 ~ 15310809 (+) True G320843
TU379980 lncRNA downstream 114494 15340566 ~ 15341207 (+) True G320848
TU380071 lncRNA downstream 235782 15461854 ~ 15463232 (+) True G320935
XM_026925902.2 mRNA upstream 32632 15175775 ~ 15191239 (+) True LOC113533638
XM_026925903.2 mRNA upstream 32632 15175776 ~ 15191239 (+) False LOC113533638
XM_034314832.1 mRNA upstream 84019 15118493 ~ 15139852 (+) True LOC113533364
XM_034314829.1 mRNA upstream 122410 15091823 ~ 15101461 (+) True LOC113533365
XM_034314830.1 mRNA upstream 122410 15091823 ~ 15101461 (+) False LOC113533365
XM_026925028.2 mRNA downstream 5475 15231547 ~ 15240528 (+) True ncstn
XM_026925039.2 mRNA downstream 15957 15242029 ~ 15248003 (+) False si:dkey-10o6.2
XM_026925035.2 mRNA downstream 15959 15242031 ~ 15248003 (+) False si:dkey-10o6.2
XM_026925038.2 mRNA downstream 15959 15242031 ~ 15248003 (+) False si:dkey-10o6.2
XM_026925037.2 mRNA downstream 16001 15242073 ~ 15248003 (+) True si:dkey-10o6.2
TU379509 other upstream 395100 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1328206 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1328206 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2451004 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3650974 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 642944 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 703880 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 874461 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 885964 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 905263 16131335 ~ 16132364 (+) True G321257

Expression Profile