Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU379941 |
| length | 408 |
| lncRNA type | sense_over |
| GC content | 0.46 |
| exon number | 1 |
| gene id | LOC113533479 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 15222778 ~ 15231580 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003403412.2 | lncRNA | downstream | 125140 | 15095677 ~ 15104463 (-) | True | LOC113533367 |
| XR_003403411.2 | lncRNA | downstream | 125143 | 15095677 ~ 15104460 (-) | False | LOC113533367 |
| TU379867 | lncRNA | downstream | 163823 | 15064126 ~ 15065780 (-) | True | G320767 |
| TU379728 | lncRNA | downstream | 569660 | 14571684 ~ 14659943 (-) | True | G320640 |
| TU379721 | lncRNA | downstream | 597432 | 14627785 ~ 14632171 (-) | True | G320635 |
| TU379997 | lncRNA | upstream | 51425 | 15281435 ~ 15281638 (-) | True | G320864 |
| TU380000 | lncRNA | upstream | 52350 | 15282360 ~ 15282740 (-) | True | G320867 |
| TU380001 | lncRNA | upstream | 53625 | 15283635 ~ 15284425 (-) | True | G320868 |
| TU380003 | lncRNA | upstream | 55628 | 15285638 ~ 15285941 (-) | True | G320870 |
| TU380004 | lncRNA | upstream | 56074 | 15286084 ~ 15286877 (-) | True | G320871 |
| XM_026925031.2 | mRNA | downstream | 8727 | 15216728 ~ 15220876 (-) | True | LOC113533134 |
| XM_034314838.1 | mRNA | downstream | 16581 | 15192241 ~ 15213022 (-) | True | vapal |
| XM_026925452.2 | mRNA | downstream | 16592 | 15192241 ~ 15213011 (-) | False | vapal |
| XM_026925744.2 | mRNA | downstream | 184519 | 15042706 ~ 15045084 (-) | True | LOC113533544 |
| XM_026925758.2 | mRNA | downstream | 193622 | 14834902 ~ 15035981 (-) | False | LOC113533549 |
| XM_026925034.2 | mRNA | upstream | 39149 | 15269159 ~ 15272159 (-) | True | LOC113533136 |
| XM_026925033.2 | mRNA | upstream | 39149 | 15269159 ~ 15272156 (-) | False | LOC113533136 |
| XM_026925032.2 | mRNA | upstream | 44911 | 15274921 ~ 15279966 (-) | True | si:ch211-155e24.3 |
| XM_026925177.2 | mRNA | upstream | 74268 | 15304278 ~ 15306780 (-) | True | LOC113533213 |
| XM_026925696.2 | mRNA | upstream | 99002 | 15329012 ~ 15332661 (-) | True | plekhj1 |
| TU379938 | other | downstream | 347 | 15227472 ~ 15229256 (-) | False | LOC113533479 |
| TU379789 | other | downstream | 484116 | 14731912 ~ 14745487 (-) | False | theg |
| trnaw-cca_17 | other | downstream | 3681164 | 11548368 ~ 11548439 (-) | True | trnaw-cca_17 |
| TU376553 | other | downstream | 4701353 | 10527282 ~ 10528250 (-) | False | ccl20a.3 |
| TU375761 | other | downstream | 6256391 | 8969781 ~ 8973212 (-) | False | LOC113542985 |
| TU380215 | other | upstream | 457248 | 15687258 ~ 15717495 (-) | False | LOC113533563 |
| TU380217 | other | upstream | 457248 | 15687258 ~ 15724356 (-) | False | LOC113533563 |
| TU380669 | other | upstream | 1127564 | 16357574 ~ 16367004 (-) | True | G321462 |
| XR_003403441.1 | other | upstream | 1389623 | 16619633 ~ 16619734 (-) | True | LOC113533663 |
| trnal-uaa_3 | other | upstream | 1743678 | 16973688 ~ 16973770 (-) | False | trnal-uaa_3 |
