RNA id: TU380071


Basic Information

Item Value
RNA id TU380071
length 1379
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G320935
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15461854 ~ 15463232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctttctaaaaaaaatcatatctgtttagaacatatATGTTCATTCCGAATAATGTATTTGGTTACATTGGTGTAAGGCATATTTGACATTCATGTATCATTATAGATATAGAAGCACTTGACAGACTGCAGCTTTAATTTCTTATGCCTGTACTGAgaaagtgaaagacagagacGGCAGCTTTTGTTTTCCAATTgcttctttatttaattaaccaaaaacacacaatcgATTTATGTATCAATACTAGTCGTTTTAGTTCATTTATGTTCTGTAACAGTTATTACTCAGTTTTTGCCTTCTTTAAAGGACACAACACATGAACATAAGGAACTGTACAGGCCCTCTGTACTGATGAGATTAAGACCGAGAGAACAGACTCAGAGAAAATGACAACGCTGTGTGTCTTGTGTATGTGAGAGATTCATTACTGGGTCAATGCATGAATGAAGAGATGGAGAGTTTGATAGGTCAGTTTAGATTGTCAGTCCTACAATCTTTGGTTCCCACAGGCACTCTCATAGTGCAGATCACGAAGTGCAAAGATCATGTGTCTGACTGTCTTACTTGTCTCATCGTTCTCTCTACaagtctctgtctctttcaaaatttctgcctttctttgttttgcaaCTTTCTTCATAATCCGGAAACTTACAATGCCAATTCCAGTGCTGTAACTATTAGGACTCTAGAAGCATGTTTGAGTCATATTAGATTGTGTATGGTCTGAGCTCCACATATGGGTCATAATTCCTTGCCTACAGTGCCACCTAgtgtgagaaacagagagaaacctGATAGGGTGGATGAGTGTTGGTGCATGTAGCATAGGCACTTCTTTGAAAAATAAAGCTGATATTCCATCCCATATGGAAACAGCGTGACGGCCATGAGTGAATTCCTGTGATAATGCACTGTGCTGTGATTGTTCCTCCAGGCATTTAATCCCAATACCCTGAGTGTGAGATGATGTTGAGGAATACTATGGATGGACAGAGGAAGGAATGGGATGGATGGGTGTAGGGTGTGagcatgagagaaagagaaaaagggtgGGGGGAGTTTGCATAGCTCTCTGtgcaaaaatgatttttcactCCTCAGTCTCTTCTCCATACACCACACACTTTATAGCACACTTGTTAAAAATGACACTGTACCTTTTGCGTGTCACTAGGATGGGAAGCTGTAGTGTACGCTCTTGTAGCCTTAGTtacccttacagaaaaatcacatacgTTTCCCATGTgatcataataataagtgaacaaatgtgaaaaagttaTTCACATGAGACATTAAGATGtgaaacatctgaaaaatgaaaccgCATATGAAAATTTGGATAattgaatatgaaaataaatggattgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379980 lncRNA upstream 120647 15340566 ~ 15341207 (+) True G320848
TU379974 lncRNA upstream 151045 15310604 ~ 15310809 (+) True G320843
TU379971 lncRNA upstream 159124 15302318 ~ 15302730 (+) False si:dkeyp-68b7.7
TU379931 lncRNA upstream 208300 15249515 ~ 15253554 (+) False fcer1gl
TU379908 lncRNA upstream 235782 15223871 ~ 15226072 (+) True G320797
TU380086 lncRNA downstream 80665 15543897 ~ 15546092 (+) True G320949
TU380088 lncRNA downstream 103322 15566554 ~ 15570473 (+) True LOC113533167
TU380114 lncRNA downstream 107462 15570694 ~ 15571089 (+) True G320977
TU380120 lncRNA downstream 132792 15596024 ~ 15596226 (+) True G320981
TU380127 lncRNA downstream 149962 15613194 ~ 15613541 (+) True G320988
XM_026925767.2 mRNA upstream 1764 15412738 ~ 15460090 (+) True LOC113533554
XM_034314712.1 mRNA upstream 123876 15332702 ~ 15337978 (+) False sf3a2
XM_026925548.2 mRNA upstream 123876 15333130 ~ 15337978 (+) True sf3a2
XM_026925661.2 mRNA upstream 135796 15321461 ~ 15326058 (+) True tpgs1
XM_026925777.2 mRNA upstream 140870 15313865 ~ 15320984 (+) True LOC113533560
XM_026925707.2 mRNA downstream 40401 15503633 ~ 15511742 (+) False pias4b
XM_034314822.1 mRNA downstream 40404 15503636 ~ 15511913 (+) False pias4b
XM_026925705.2 mRNA downstream 40406 15503638 ~ 15511913 (+) True pias4b
XM_034314821.1 mRNA downstream 41093 15504325 ~ 15511913 (+) False pias4b
XM_026925701.2 mRNA downstream 51180 15514412 ~ 15521221 (+) True map2k2b
TU379509 other upstream 633083 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1566189 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1566189 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2688987 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3888957 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 405784 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 466720 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 637301 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 648804 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 668103 16131335 ~ 16132364 (+) True G321257

Expression Profile