RNA id: TU380130


Basic Information

Item Value
RNA id TU380130
length 222
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G320991
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15615997 ~ 15616218 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGATGCTGATCTTGGCTGACCATTTGGACGTGCCATCGAGAACGCTCTGCTTGATCTGCTTCATCTGGGTCCCATGGGTTGTCTTGGCCACGCCGAACACCTCCTGGATGAGCTCAAAGATCTCGGGTTTGTTGCGTTCACGGATCTTCATGCGGTCCTTCAGGACCATGATGATGTTCTGAGTGCGGTCCTCTGCACCGTGCTTAGAGCTCTTCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380127 lncRNA upstream 2456 15613194 ~ 15613541 (+) True G320988
TU380120 lncRNA upstream 19771 15596024 ~ 15596226 (+) True G320981
TU380114 lncRNA upstream 44908 15570694 ~ 15571089 (+) True G320977
TU380088 lncRNA upstream 45524 15566554 ~ 15570473 (+) True LOC113533167
TU380086 lncRNA upstream 69905 15543897 ~ 15546092 (+) True G320949
TU380131 lncRNA downstream 693 15616911 ~ 15617123 (+) True G320992
TU380138 lncRNA downstream 9584 15625802 ~ 15682209 (+) False slc25a42
XR_004576905.1 lncRNA downstream 66853 15683071 ~ 15704584 (+) True LOC117600003
TU380377 lncRNA downstream 406268 16022486 ~ 16023068 (+) True G321203
TU380389 lncRNA downstream 425576 16041794 ~ 16043738 (+) True G321214
XM_026925249.2 mRNA upstream 29714 15580021 ~ 15586283 (+) True LOC113533252
XM_026925252.2 mRNA upstream 37919 15571964 ~ 15578078 (+) True mbd3a
XM_026925561.2 mRNA downstream 34403 15650621 ~ 15658676 (+) True LOC113533414
XM_026925001.2 mRNA downstream 43758 15659976 ~ 15666070 (+) True armc6
XM_026925405.2 mRNA downstream 51535 15667753 ~ 15682276 (+) True slc25a42
XM_034297740.1 mRNA downstream 181973 15798191 ~ 15842389 (+) True LOC113533481
XM_026925305.2 mRNA downstream 246929 15863147 ~ 15890456 (+) True sbno2a
TU379509 other upstream 787226 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1720332 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1720332 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2843130 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 4043100 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 252798 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 313734 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 484315 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 495818 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 515117 16131335 ~ 16132364 (+) True G321257