RNA id: XR_004580366.1


Basic Information

Item Value
RNA id XR_004580366.1
length 1927
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC113533563
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15687082 ~ 15724356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcgcGCTCGCCCTCACGCGCGTCTCTCCCTCGTCGCCTTCGGTTGCTGTTTTTTCCtttgaagagaaaagaaaacacgcTAATTAGCCGAAAGGGAATAGCTACGGGCTAATTAACAGACAACAAATTTCGACTGGAAAAATCCTTTAAAGgtgtttagcaaaaaaaaaaaaaaaaaaagtctaatatCAACCGTCGTGTTCACTCGGGTCGCCATGGATACGTCCGAACTAAACCCACACACCTCTGTACTAATTAGTGtaaaagaaacaaaccaaacaagGCTAGTGACATTATGCTAAGCTACAGAGCGCTGTTTAGTGCGGGAGTGTGCGGGGTTTAGATGTAGCCTCCCTGAATATAGCAGGTGGACTCAGCTAACTTCTTCTTTCCTCTCGACTCGAGGTCACGTTTTGTTACCAAGTCAAGATCATTCATCAGCTGCGTGACTAGGCTCAACATTGCAGAAAAGAGAgtatgagaagaaaaaaaagagagtgggAGGCAGAGATGAAGTCCAACATCGCCACCggctctcttcctcctctgcaAGTCCGTCTCTCCATCGCAGGAAAGGGTGGGAGTGCACTAAGGCCAGCCAGGGTGAGGCGTCATGGGCTTGAGAAGCATCCTGAACCCCGCTCGGTCAACAGCACCTCTGGAGCTCAGAGCTCAGATAGAAATCAATACAGGGAAAGAGAGACTGATGCTGGATCACCCAACCTAGCCCTGAGCCTGCAGGCCAGATgacctcccacacacacatggtcaTACACGctgacacacatacaaatacatactGACATACAGCTAtactatcacacacactcatgactaccacacacctacacatgcatgtgtttgtgGGTCTGGTTTTCCTCGAGGCTGTGTTATTTTGGAGAAACCTCTACAATCCAAACAGGCCTCTATTATTTTTTCGTGAAGATGGCAAAGGTCCTCGCTTTGTGTTTCCCCCACTTTTGTGCCATTTCTCTACTTGTGTCTGTCCATGTCACCTTCCACCTCTATGTGGCaagaaaaatcattcaaatatatcaaatatcTACAAGGATGGACTTCTTCCCCTGAGCATCTCATTGCTTATTCAGTGGCAAGACTTGAAAGAGGAAAGCAGCTGTATCACGTCCTGCTGTGCTCCACAACTCTGCACCAGAAACTCACTATGCCTCTTCCGTAATAGCCACTTCTTTCACAACCAACCAGCTCACAAGATAGTCAGCAAAAGGGACACGTTCTGGTTCCTGAATATGGTGTGGACTTAACAAGAGACACAGCGTAAGAGACTGAGGAGCAAGCTGCTCAAAAAGGAAGAACAGCTGAGAAACTGAGGAAGAACAGCTGCTCAAAAAGTGAATTCTTCAGCTAAGATCGCTTACCTCAGTGATATAGACGAGGACAAGGGAAGCGTGTCTcaacaggagtgtgtgatgagacAGACAGCACTATAGTGAAGACAGTGATGTTCAGCTGCTCTCATTCTGCTCGAAAACAGTGAGAGGAAAACACAGATCAGAATATCACTGTGGGACTCGAGAGATTTTTGTGAAGTACAAAATGAGTTTCTGCTGAACTTACCTTTGCTCTCAGGCTGCTTTTGATTAATAACATGGACATTTCATCATGGCATTTTTGTTCTCCGGGTTATTTCAGAAAACTGGGCTGGCTACAAGAGGTAAGTAGATAAAAAAAGTGGTAAGTAATATGCATTATTGAAAAAGAACCTATGCAGAGaagtttaaattttatatatataaattaacaaATGATGCCATATGTGTGTACTTCTATATCTATATACTTCTAtctatatgtttttatttttatttattaattttcacaattaaaaaaagattctttCTAACTTGATGTTAATGTTATGcgatttttaataaagtttttgaATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380184 lncRNA downstream 94466 15592160 ~ 15592616 (-) True G321032
TU380032 lncRNA downstream 226666 15380135 ~ 15460416 (-) True G320897
TU380013 lncRNA downstream 383057 15303811 ~ 15304025 (-) True G320880
TU380004 lncRNA downstream 400205 15286084 ~ 15286877 (-) True G320871
TU380003 lncRNA downstream 401141 15285638 ~ 15285941 (-) True G320870
XR_004576914.1 lncRNA upstream 93817 15811353 ~ 15827344 (-) True LOC117595737
TU380518 lncRNA upstream 323345 16040881 ~ 16041741 (-) True G321330
TU380538 lncRNA upstream 331906 16049442 ~ 16049643 (-) True G321347
TU380540 lncRNA upstream 381332 16098868 ~ 16099238 (-) True G321349
TU380546 lncRNA upstream 470440 16187976 ~ 16190570 (-) False G321354
XM_034297689.1 mRNA downstream 38338 15594435 ~ 15648744 (-) False LOC113533480
XM_034297688.1 mRNA downstream 38338 15594435 ~ 15648744 (-) True LOC113533480
XM_026925734.2 mRNA downstream 197822 15463616 ~ 15489260 (-) True onecut3b
XM_026925736.2 mRNA downstream 337576 15338737 ~ 15349506 (-) True LOC113533539
XM_026925696.2 mRNA downstream 354421 15329012 ~ 15332661 (-) True plekhj1
XM_026925125.2 mRNA upstream 136967 15854503 ~ 15861482 (-) True zgc:85843
XM_026925307.2 mRNA upstream 206685 15924221 ~ 15929067 (-) True polr2ea
XM_026925564.2 mRNA upstream 324292 16041828 ~ 16068561 (-) False LOC113533416
XM_026925563.2 mRNA upstream 324292 16041828 ~ 16068561 (-) True LOC113533416
XM_026925268.2 mRNA upstream 353570 16071106 ~ 16088518 (-) True upf1
TU379938 other downstream 457826 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 941595 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 4138643 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 5158832 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 6713870 8969781 ~ 8973212 (-) False LOC113542985
TU380669 other upstream 640038 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 902097 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 1256152 16973688 ~ 16973770 (-) False trnal-uaa_3
trnal-uaa_4 other upstream 1363485 17081021 ~ 17081103 (-) True trnal-uaa_4
TU381420 other upstream 1782529 17500065 ~ 17500832 (-) True G322080

Expression Profile